CF504538

Overview
NameCF504538
Unique NameCF504538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length352
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504538 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 9.761e-59
Identity = 109/117 (93.16%), Postives = 116/117 (99.15%), Query Frame = 2 
Query:    2 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 352
            YDYLFK+VLIGDSGVGKSNLLSRF++NEF+LESKSTIGVEFATRSIRVDDK+VKAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+TRHVTFENVERWLKELRDHTD NIVIMLVGN
Sbjct:   11 YDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGN 127
[Close]
BLAST of CF504538 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 4.844e-58
Identity = 110/117 (94.02%), Postives = 114/117 (97.44%), Query Frame = 2 
Query:    2 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 352
            YDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRS++VD KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TFENVERWLKELRDHTD NIV+MLVGN
Sbjct:   11 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGN 127
[Close]
BLAST of CF504538 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.079e-57
Identity = 109/117 (93.16%), Postives = 113/117 (96.58%), Query Frame = 2 
Query:    2 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 352
            YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRS+ VDDKV+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TFENVE WLKELR+HTD NIV+MLVGN
Sbjct:   10 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGN 126
[Close]
BLAST of CF504538 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 5.356e-57
Identity = 108/117 (92.31%), Postives = 113/117 (96.58%), Query Frame = 2 
Query:    2 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 352
            YDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRSI+VD K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+ VTFENVERWLKELRDH DSNIVIMLVGN
Sbjct:    9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGN 125
[Close]
BLAST of CF504538 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 9.136e-57
Identity = 104/117 (88.89%), Postives = 114/117 (97.44%), Query Frame = 2 
Query:    2 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 352
            YDYLFK+VLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFAT+S+ +D+KV+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT+ENV RWLKELRDHTD NIV+ML+GN
Sbjct:   10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGN 126
[Close]
BLAST of CF504538 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 217.238 bits (552), Expect = 2.035e-56
Identity = 105/117 (89.74%), Postives = 113/117 (96.58%), Query Frame = 2 
Query:    2 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 352
            YDYLFKVVLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRSI+VD K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGN
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
[Close]
BLAST of CF504538 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 217.238 bits (552), Expect = 2.035e-56
Identity = 105/117 (89.74%), Postives = 113/117 (96.58%), Query Frame = 2 
Query:    2 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 352
            YDYLFKVVLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRSI+VD K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGN
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
[Close]
BLAST of CF504538 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 217.238 bits (552), Expect = 2.035e-56
Identity = 105/117 (89.74%), Postives = 113/117 (96.58%), Query Frame = 2 
Query:    2 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 352
            YDYLFKVVLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRSI+VD K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGN
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
[Close]
BLAST of CF504538 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 217.238 bits (552), Expect = 2.035e-56
Identity = 105/117 (89.74%), Postives = 113/117 (96.58%), Query Frame = 2 
Query:    2 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 352
            YDYLFKVVLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRSI+VD K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGN
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
[Close]
BLAST of CF504538 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 217.238 bits (552), Expect = 2.035e-56
Identity = 105/117 (89.74%), Postives = 113/117 (96.58%), Query Frame = 2 
Query:    2 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 352
            YDYLFKVVLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRSI+VD K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGN
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
The following BLAST results are available for this feature:
BLAST of CF504538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11B_TOBAC9.761e-5993.16Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RIC2_ORYSJ4.844e-5894.02Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RAA1C_ARATH1.079e-5793.16Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
YPTC6_CHLRE5.356e-5792.31Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
YPT3_NICPL9.136e-5788.89Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RB11B_RAT2.035e-5689.74Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE2.035e-5689.74Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN2.035e-5689.74Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
RB11B_BOVIN2.035e-5689.74Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RB11A_RAT2.035e-5689.74Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-027 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504538 ID=CF504538; Name=CF504538; organism=Citrus sinensis; type=EST; length=352bp
CTACGATTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGA
AATCAAATCTGTTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCC
AAATCCACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGA
CAAGGTCGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAACGATATC
GTGCTATCACAAGTGCGTACTACCGGGGGGCTGTTGGTGCCTTGCTTGTC
TATGATGTCACCCGACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAA
AGAGCTTCGGGATCACACAGACTCAAACATTGTGATAATGCTTGTGGGTA
AC
back to top