CF504562

Overview
NameCF504562
Unique NameCF504562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length312
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:57..367. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_CAPAN (Nucleoside diphosphate kinase OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.388e-33
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            MEQTFIMIKPDGVQRGLVGEII RFEKKGFSLKGLKL+TVDR FAEKHY DLS+KPFF  L+EYI SGPVV+M+WEG+G
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIIGRFEKKGFSLKGLKLITVDRAFAEKHYADLSAKPFFNGLVEYIVSGPVVSMVWEGKG 79          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK1_TOBAC (Nucleoside diphosphate kinase 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.388e-33
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            MEQTFIMIKPDGVQRGLVGEII RFEKKGFSLKGLKL+TVDR FAEKHY DLS+KPFF  L++YI SGPVVAM+WEG+G
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIIGRFEKKGFSLKGLKLITVDRAFAEKHYSDLSAKPFFNGLVDYIISGPVVAMVWEGKG 79          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK1_SPIOL (Nucleoside diphosphate kinase 1 OS=Spinacia oleracea GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.368e-33
Identity = 66/79 (83.54%), Postives = 71/79 (89.87%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            MEQTFIMIKPDGVQRGLVGEII RFEKKGFSLK LK + VDRPFAEKHY DLS+KPFF  L+EYI SGPVVAM+WEG+G
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIISRFEKKGFSLKALKFVNVDRPFAEKHYADLSAKPFFNGLVEYIVSGPVVAMVWEGKG 79          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK1_MESCR (Nucleoside diphosphate kinase 1 OS=Mesembryanthemum crystallinum GN=NDKP1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.368e-33
Identity = 66/79 (83.54%), Postives = 71/79 (89.87%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            MEQTFIMIKPDGVQRGLVGEII RFEKKGFSLK LK + VDRPFAEKHY DLS+KPFF  L+EYI SGPVVAM+WEG+G
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIISRFEKKGFSLKALKFINVDRPFAEKHYADLSAKPFFNGLVEYIVSGPVVAMVWEGKG 79          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDKA_FLABI (Nucleoside diphosphate kinase A OS=Flaveria bidentis PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.275e-33
Identity = 67/78 (85.90%), Postives = 71/78 (91.03%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE 309
            MEQTFIMIKPDGVQ GLVGEII RFEKKGFSLKGLKL+TVDR FAEKHY DLSSKPFF  L+EYI SGPVVAM+WEG+
Sbjct:    1 MEQTFIMIKPDGVQSGLVGEIIGRFEKKGFSLKGLKLLTVDRAFAEKHYADLSSKPFFNGLVEYIVSGPVVAMVWEGK 78          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK1_SOYBN (Nucleoside diphosphate kinase 1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.175e-32
Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 1
Query:   79 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE 309
            EQTFIMIKPDGVQRGL+GEII RFEKKGF LKGLKL+TVDRPFAEKHY DLS+KPFF  L++YI SGPVVAMIWEG+
Sbjct:    3 EQTFIMIKPDGVQRGLIGEIISRFEKKGFYLKGLKLVTVDRPFAEKHYADLSAKPFFSGLVDYIISGPVVAMIWEGK 79          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_HELAN (Nucleoside diphosphate kinase OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.004e-32
Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE 309
            MEQTFIMIKPDGVQRGLVGEII RFEKKGF+LKGLKL+TVD+ FAEKHY DLS+KPFF  L+EYI SGPVVAM+WEG+
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIIGRFEKKGFTLKGLKLLTVDQAFAEKHYADLSAKPFFNGLVEYIISGPVVAMVWEGK 78          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDKB_FLABI (Nucleoside diphosphate kinase B OS=Flaveria bidentis PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.419e-32
Identity = 65/78 (83.33%), Postives = 71/78 (91.03%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE 309
            ME TFIMIKPDGVQRGLVGEII RFEKKGFSLKGLKL+TVD+ FAEKHY DLS+KPFF  L+EYI SGPVVAM+WEG+
Sbjct:    1 MEHTFIMIKPDGVQRGLVGEIIGRFEKKGFSLKGLKLLTVDQAFAEKHYADLSAKPFFNGLVEYIISGPVVAMVWEGK 78          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK1_ARATH (Nucleoside diphosphate kinase 1 OS=Arabidopsis thaliana GN=NDPK1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.832e-32
Identity = 63/78 (80.77%), Postives = 72/78 (92.31%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE 309
            MEQTFIMIKPDGVQRGL+GE+I RFEKKGF+LKGLKL++V+R FAEKHYEDLSSK FF  L++YI SGPVVAMIWEG+
Sbjct:    1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGK 78          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_SOLLC (Nucleoside diphosphate kinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.617e-32
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 1
Query:   88 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            FIMIKPDGVQRGLVGEII RFEKKGFSLKGLKL+TVDR FAEKHY DLS+KPFF  L+EYI SGPVVAM+WEG+G
Sbjct:    1 FIMIKPDGVQRGLVGEIISRFEKKGFSLKGLKLITVDRAFAEKHYADLSAKPFFNGLVEYIVSGPVVAMVWEGKG 75          
The following BLAST results are available for this feature:
BLAST of CF504562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_CAPAN1.388e-3384.81Nucleoside diphosphate kinase OS=Capsicum annuum P... [more]
NDK1_TOBAC1.388e-3384.81Nucleoside diphosphate kinase 1 OS=Nicotiana tabac... [more]
NDK1_SPIOL2.368e-3383.54Nucleoside diphosphate kinase 1 OS=Spinacia olerac... [more]
NDK1_MESCR2.368e-3383.54Nucleoside diphosphate kinase 1 OS=Mesembryanthemu... [more]
NDKA_FLABI5.275e-3385.90Nucleoside diphosphate kinase A OS=Flaveria bident... [more]
NDK1_SOYBN1.175e-3284.42Nucleoside diphosphate kinase 1 OS=Glycine max PE=... [more]
NDK_HELAN2.004e-3283.33Nucleoside diphosphate kinase OS=Helianthus annuus... [more]
NDKB_FLABI3.419e-3283.33Nucleoside diphosphate kinase B OS=Flaveria bident... [more]
NDK1_ARATH5.832e-3280.77Nucleoside diphosphate kinase 1 OS=Arabidopsis tha... [more]
NDK_SOLLC7.617e-3285.33Nucleoside diphosphate kinase (Fragment) OS=Solanu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-051 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504562 ID=CF504562; Name=CF504562; organism=Citrus sinensis; type=EST; length=312bp
CTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCAATTCTCAAAACAA
GTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACTTTCATCATGATCA
AGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAATCATCATCAGATTT
GAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGACCG
CCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTG
GTTCTCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTGG
GAGGGTGAAGGT
back to top