CF504576

Overview
NameCF504576
Unique NameCF504576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length377
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1581 contig Csv1_Contig1581:78..454. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504576 vs. ExPASy Swiss-Prot
Match: TM147_RAT (Transmembrane protein 147 OS=Rattus norvegicus GN=Tmem147 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.878e-12
Identity = 38/113 (33.63%), Postives = 58/113 (51.33%), Query Frame = 3 
Query:   39 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSETDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFAD 377
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAE 110
[Close]
BLAST of CF504576 vs. ExPASy Swiss-Prot
Match: TM147_MOUSE (Transmembrane protein 147 OS=Mus musculus GN=Tmem147 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.878e-12
Identity = 38/113 (33.63%), Postives = 58/113 (51.33%), Query Frame = 3 
Query:   39 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSETDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFAD 377
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAE 110
[Close]
BLAST of CF504576 vs. ExPASy Swiss-Prot
Match: TM147_HUMAN (Transmembrane protein 147 OS=Homo sapiens GN=TMEM147 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.878e-12
Identity = 38/113 (33.63%), Postives = 58/113 (51.33%), Query Frame = 3 
Query:   39 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSETDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFAD 377
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAE 110
[Close]
BLAST of CF504576 vs. ExPASy Swiss-Prot
Match: TM147_BOVIN (Transmembrane protein 147 OS=Bos taurus GN=TMEM147 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.878e-12
Identity = 38/113 (33.63%), Postives = 58/113 (51.33%), Query Frame = 3 
Query:   39 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSETDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFAD 377
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAE 110
[Close]
BLAST of CF504576 vs. ExPASy Swiss-Prot
Match: TM147_XENTR (Transmembrane protein 147 OS=Xenopus tropicalis GN=tmem147 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.822e-11
Identity = 37/115 (32.17%), Postives = 58/115 (50.43%), Query Frame = 3 
Query:   39 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSE--TDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFAD 377
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A   YL   L K++ LATF    E     +D   E +KA +   D+ GL+  +++   +     +K     +GWA A+
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWRCVQAGATYLCVQLCKMLFLATFFPTWEGAVGAYDFIGEFMKATVDLADLLGLHLVMSRNAGKG---EYKIMVAAMGWATAE 112
[Close]
BLAST of CF504576 vs. ExPASy Swiss-Prot
Match: TM147_XENLA (Transmembrane protein 147 OS=Xenopus laevis GN=tmem147 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.822e-11
Identity = 37/115 (32.17%), Postives = 58/115 (50.43%), Query Frame = 3 
Query:   39 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSE--TDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFAD 377
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A   YL   L K++ LATF    E     +D   E +KA +   D+ GL+  +++   +     +K     +GWA A+
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWRCVQAGATYLCVQLCKMLFLATFFPTWEGAAGAYDFIGEFMKATVDLADLLGLHLVMSRNAGKG---EYKIMVAAMGWATAE 112
[Close]
BLAST of CF504576 vs. ExPASy Swiss-Prot
Match: TM147_DANRE (Transmembrane protein 147 OS=Danio rerio GN=tmem147 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 37/115 (32.17%), Postives = 58/115 (50.43%), Query Frame = 3 
Query:   39 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSE--TDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFAD 377
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A   YL   L K++ LATF    E     +D   E +KA +   D+ GL+  +++   +     +K     +GWA A+
Sbjct:    1 MTLFHFGNCFSLAYFPYFITYKCSGLSEYNAFWRCVQAGATYLFVRLCKMLFLATFFPTWEGGAGVYDFVGEFMKATVDMADLLGLHLVMSRNAGKG---EYKIMVAAMGWATAE 112
The following BLAST results are available for this feature:
BLAST of CF504576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TM147_RAT6.878e-1233.63Transmembrane protein 147 OS=Rattus norvegicus GN=... [more]
TM147_MOUSE6.878e-1233.63Transmembrane protein 147 OS=Mus musculus GN=Tmem1... [more]
TM147_HUMAN6.878e-1233.63Transmembrane protein 147 OS=Homo sapiens GN=TMEM1... [more]
TM147_BOVIN6.878e-1233.63Transmembrane protein 147 OS=Bos taurus GN=TMEM147... [more]
TM147_XENTR5.822e-1132.17Transmembrane protein 147 OS=Xenopus tropicalis GN... [more]
TM147_XENLA5.822e-1132.17Transmembrane protein 147 OS=Xenopus laevis GN=tme... [more]
TM147_DANRE9.931e-1132.17Transmembrane protein 147 OS=Danio rerio GN=tmem14... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-065 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504576 ID=CF504576; Name=CF504576; organism=Citrus sinensis; type=EST; length=377bp
AGCGGTTTCCGTGACGGAGAGAGGAAGGTTAGGTAAAGATGACGGTTTTT
CACTTCTTCAACTGTGCGATTCTGACTTTCGGCCCTCACGCCGTCTACTA
CTCCGCCACGCCCTTATCCGAGTATGATACACTTGGTACCTCTGTGAAAG
CGGCTCTCGTTTATCTCGGCACAGCTCTTGTTAAGCTTGTTTGCTTAGCG
ACGTTTCTTAAGGTATCAGAGACTGATAACTTCGATCCATATCAGGAACT
GTTGAAAGCATTGATCGGTTTTATAGATGTTGCTGGGCTTTACTTTGCCT
TAACCCAGTTGACTCACAGGAACATTTCTCAGAATCATAAATTTCAAGCT
GTTGGACTGGGGTGGGCTTTTGCTGAT
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