CF504629

Overview
NameCF504629
Unique NameCF504629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length318
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:243..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF504629 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.878e-14
Identity = 42/92 (45.65%), Postives = 54/92 (58.70%), Query Frame = 3 
Query:   39 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIG 314
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKV-PQPLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMG 82
The following BLAST results are available for this feature:
BLAST of CF504629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.878e-1445.65Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-118 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504629 ID=CF504629; Name=CF504629; organism=Citrus sinensis; type=EST; length=318bp
AAGATTTAGAAACTAGCAGCTAAATTGTAAATTTAAAGATGCTAGAGAAG
CTTTGGGACGATGTTGTGGCAGGGCCTCAGCCTGATCGTGGCCTTGGCAG
GCTGAGGAAAATCACCACAACACCCTTAGCAGTCAAAGAGGGTGGTGAGG
CGGAGTCTTCGTCGGGCAAGTTCCAGAGGTCTCTGTCAATGCCAGCGAGT
CCAGGGGCACCGTCGACGCCAGTGACGCCGACGACGCCGCTGTCGGCGCG
TAAGGACAACGTGTGGAGGAGCGTGTTTCACCCCGGTAGCAACCTTGCTA
CTAGGGGTATCGGTGCAG
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