CF504631

Overview
NameCF504631
Unique NameCF504631
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length233
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8477 contig Csv1_Contig8477:7..239. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504631 vs. ExPASy Swiss-Prot
Match: PX11C_ARATH (Peroxisomal membrane protein 11C OS=Arabidopsis thaliana GN=PEX11C PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.267e-30
Identity = 64/69 (92.75%), Postives = 67/69 (97.10%), Query Frame = 3
Query:   27 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDL 233
            MSTL+ TRAEL LVV+YLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDK+TSLARKVFRLFKFVNDL
Sbjct:    1 MSTLETTRAELGLVVVYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKNTSLARKVFRLFKFVNDL 69          
BLAST of CF504631 vs. ExPASy Swiss-Prot
Match: PX11D_ARATH (Peroxisomal membrane protein 11D OS=Arabidopsis thaliana GN=PEX11D PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 8.034e-29
Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 3
Query:   30 STLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDL 233
            +TLD +RAELALVV+YLNKAEARDK+CRAIQYGSKFLS GQPGTAQNVDKSTSLARKVFRLFKFVNDL
Sbjct:    3 TTLDVSRAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFRLFKFVNDL 70          
BLAST of CF504631 vs. ExPASy Swiss-Prot
Match: PX11E_ARATH (Peroxisomal membrane protein 11E OS=Arabidopsis thaliana GN=PEX11E PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.370e-28
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 3
Query:   27 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVND 230
            M+TLD TRAELAL+VLYLNKAEARDKICRAIQYGSKFLS GQPGTAQ VDK+TSLARKVFRLFKFVND
Sbjct:    1 MTTLDLTRAELALIVLYLNKAEARDKICRAIQYGSKFLSGGQPGTAQTVDKNTSLARKVFRLFKFVND 68          
BLAST of CF504631 vs. ExPASy Swiss-Prot
Match: PX111_ORYSJ (Peroxisomal membrane protein 11-1 OS=Oryza sativa subsp. japonica GN=PEX11-1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.987e-28
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 3
Query:   27 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDL 233
            MSTLDATRAEL LVVLYLNKAEARDKICRAIQYGSKF+S+GQPGTAQ+VD+ST+LARKVFRL K+VNDL
Sbjct:    1 MSTLDATRAELGLVVLYLNKAEARDKICRAIQYGSKFISNGQPGTAQDVDRSTTLARKVFRLLKWVNDL 69          
BLAST of CF504631 vs. ExPASy Swiss-Prot
Match: PX115_ORYSJ (Peroxisomal membrane protein 11-5 OS=Oryza sativa subsp. japonica GN=PEX11-5 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.160e-27
Identity = 59/69 (85.51%), Postives = 67/69 (97.10%), Query Frame = 3
Query:   27 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDL 233
            MS+L++ RA+LAL++LYLNKAEARDKICRAIQYGSKF+S+GQPG AQNVDKSTSLARKVFRLFKFVNDL
Sbjct:    1 MSSLESARADLALLILYLNKAEARDKICRAIQYGSKFVSNGQPGPAQNVDKSTSLARKVFRLFKFVNDL 69          
The following BLAST results are available for this feature:
BLAST of CF504631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PX11C_ARATH7.267e-3092.75Peroxisomal membrane protein 11C OS=Arabidopsis th... [more]
PX11D_ARATH8.034e-2991.18Peroxisomal membrane protein 11D OS=Arabidopsis th... [more]
PX11E_ARATH1.370e-2891.18Peroxisomal membrane protein 11E OS=Arabidopsis th... [more]
PX111_ORYSJ3.987e-2888.41Peroxisomal membrane protein 11-1 OS=Oryza sativa ... [more]
PX115_ORYSJ1.160e-2785.51Peroxisomal membrane protein 11-5 OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-120 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504631 ID=CF504631; Name=CF504631; organism=Citrus sinensis; type=EST; length=233bp
CGTTGCGCACTTTTTTCGGATAAAAAATGAGTACACTGGATGCAACCAGA
GCAGAACTTGCACTTGTGGTTTTGTATTTGAATAAGGCTGAAGCCAGGGA
CAAGATATGCAGAGCTATACAATATGGTTCAAAATTCTTGAGTGATGGAC
AGCCTGGTACTGCCCAAAATGTTGACAAGTCAACCAGCTTAGCCCGGAAA
GTTTTCCGTCTTTTTAAGTTTGTCAATGATTTG
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