CF504632

Overview
NameCF504632
Unique NameCF504632
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length277
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig553 contig Csv1_Contig553:1..277. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMP1D_ARATH (Methionine aminopeptidase 1D, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=MAP1D PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.722e-45
Identity = 81/91 (89.01%), Postives = 87/91 (95.60%), Query Frame = 3
Query:    3 GTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVDDE 275
            GTLVKPG+TTDEID+AVH MII+NGAYPSPLGYGGFPKSVCTSVNECICHGIPDSR LEDGD INIDVTVYLNGYHGDTS TFFCG+VD++
Sbjct:  131 GTLVKPGVTTDEIDEAVHNMIIENGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRPLEDGDIINIDVTVYLNGYHGDTSATFFCGNVDEK 221          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMP1B_ARATH (Methionine aminopeptidase 1B, chloroplastic OS=Arabidopsis thaliana GN=MAP1B PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 1.826e-41
Identity = 75/90 (83.33%), Postives = 83/90 (92.22%), Query Frame = 3
Query:    3 GTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVDD 272
            GTLVKP +TT+EIDKAVH MII+ GAYPSPLGYGGFPKSVCTSVNEC+CHGIPDSR L+ GD INIDVTVYL+GYHGDTS TFFCG+VD+
Sbjct:  150 GTLVKPSVTTNEIDKAVHDMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQLQSGDIINIDVTVYLDGYHGDTSRTFFCGEVDE 239          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMP1C_ARATH (Methionine aminopeptidase 1C, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=MAP1C PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 4.972e-39
Identity = 72/89 (80.90%), Postives = 81/89 (91.01%), Query Frame = 3
Query:    3 GTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVD 269
            GTLV+P +TTDEIDKAVHQM+I+ GAYPSPLGYGGFPKSVCTSVNEC+ HGIPDSR L++GD INIDV VYL+GYHGDTS TF CGDV+
Sbjct:  123 GTLVRPFVTTDEIDKAVHQMVIEFGAYPSPLGYGGFPKSVCTSVNECMFHGIPDSRPLQNGDIINIDVAVYLDGYHGDTSKTFLCGDVN 211          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMP1D_DICDI (Methionine aminopeptidase 1D, mitochondrial OS=Dictyostelium discoideum GN=map1d PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.955e-35
Identity = 66/89 (74.16%), Postives = 74/89 (83.15%), Query Frame = 3
Query:    3 GTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVD 269
            GTLV+PGITTDEIDK VHQ IID GAYPSPLGY GFPKS+CTS+NE +CHGIPD R LE GD + IDVT+Y NGYHGDT  TF  G++D
Sbjct:  183 GTLVRPGITTDEIDKLVHQNIIDRGAYPSPLGYKGFPKSICTSINEVLCHGIPDDRPLEFGDIVKIDVTLYYNGYHGDTCATFPVGEID 271          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMP1D_HUMAN (Methionine aminopeptidase 1D, mitochondrial OS=Homo sapiens GN=MAP1D PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.077e-33
Identity = 64/90 (71.11%), Postives = 73/90 (81.11%), Query Frame = 3
Query:    3 GTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVDD 272
            G  +K  +TT+EID  VH+ II + AYPSPLGYGGFPKSVCTSVN  +CHGIPDSR L+DGD INIDVTVY NGYHGDTS TF  G+VD+
Sbjct:  112 GKSLKVDMTTEEIDALVHREIISHNAYPSPLGYGGFPKSVCTSVNNVLCHGIPDSRPLQDGDIINIDVTVYYNGYHGDTSETFLVGNVDE 201          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMP1D_DANRE (Methionine aminopeptidase 1D, mitochondrial OS=Danio rerio GN=map1d PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.549e-32
Identity = 64/91 (70.33%), Postives = 71/91 (78.02%), Query Frame = 3
Query:    3 GTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVDDE 275
            G  +K G+TTDEID  VHQ  I +  YPSPL YGGFPKSVCTSVN  +CHGIPDSR L+DGD INIDVTVYL GYHGDTS TF  G V+D+
Sbjct:  115 GNSLKVGMTTDEIDFIVHQEAIRHNGYPSPLHYGGFPKSVCTSVNNVVCHGIPDSRPLQDGDIINIDVTVYLEGYHGDTSETFLIGSVNDQ 205          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM_MYCTU (Methionine aminopeptidase OS=Mycobacterium tuberculosis GN=map PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.886e-32
Identity = 59/91 (64.84%), Postives = 70/91 (76.92%), Query Frame = 3
Query:    3 GTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVDDE 275
            G  V PG+TTDE+D+  H+ ++DNGAYPS LGY GFPKS CTS+NE ICHGIPDS  + DGD +NIDVT Y+ G HGDT+ TF  GDV DE
Sbjct:   65 GKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADE 155          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM_MYCBO (Methionine aminopeptidase OS=Mycobacterium bovis GN=map PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.886e-32
Identity = 59/91 (64.84%), Postives = 70/91 (76.92%), Query Frame = 3
Query:    3 GTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVDDE 275
            G  V PG+TTDE+D+  H+ ++DNGAYPS LGY GFPKS CTS+NE ICHGIPDS  + DGD +NIDVT Y+ G HGDT+ TF  GDV DE
Sbjct:   65 GKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADE 155          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMP1D_MOUSE (Methionine aminopeptidase 1D, mitochondrial OS=Mus musculus GN=Map1d PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.713e-31
Identity = 63/90 (70.00%), Postives = 71/90 (78.89%), Query Frame = 3
Query:    3 GTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVDD 272
            G  +K  +TT+EID  VH  II + AYPSPLGYG FPKSVCTSVN  +CHGIPDSR L+DGD INIDVTVY NGYHGDTS TF  G+VD+
Sbjct:  112 GKSLKVDMTTEEIDALVHWEIIRHDAYPSPLGYGRFPKSVCTSVNNVLCHGIPDSRPLQDGDIINIDVTVYYNGYHGDTSETFLVGNVDE 201          
BLAST of CF504632 vs. ExPASy Swiss-Prot
Match: AMPM1_BOVIN (Methionine aminopeptidase 1 OS=Bos taurus GN=METAP1 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.110e-30
Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 3
Query:    9 LVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSPTFFCGDVDD 272
            L+KPG+TT+EID AVH   I    YPSPL Y  FPKS CTSVNE ICHGIPD R L++GD +N+D+T+Y NGYHGD + TFF GDVD+
Sbjct:  156 LIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGDVDE 243          
The following BLAST results are available for this feature:
BLAST of CF504632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
AMP1D_ARATH2.722e-4589.01Methionine aminopeptidase 1D, chloroplastic/mitoch... [more]
AMP1B_ARATH1.826e-4183.33Methionine aminopeptidase 1B, chloroplastic OS=Ara... [more]
AMP1C_ARATH4.972e-3980.90Methionine aminopeptidase 1C, chloroplastic/mitoch... [more]
AMP1D_DICDI1.955e-3574.16Methionine aminopeptidase 1D, mitochondrial OS=Dic... [more]
AMP1D_HUMAN4.077e-3371.11Methionine aminopeptidase 1D, mitochondrial OS=Hom... [more]
AMP1D_DANRE1.549e-3270.33Methionine aminopeptidase 1D, mitochondrial OS=Dan... [more]
AMPM_MYCTU5.886e-3264.84Methionine aminopeptidase OS=Mycobacterium tubercu... [more]
AMPM_MYCBO5.886e-3264.84Methionine aminopeptidase OS=Mycobacterium bovis G... [more]
AMP1D_MOUSE1.713e-3170.00Methionine aminopeptidase 1D, mitochondrial OS=Mus... [more]
AMPM1_BOVIN1.110e-3064.77Methionine aminopeptidase 1 OS=Bos taurus GN=METAP... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-121 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504632 ID=CF504632; Name=CF504632; organism=Citrus sinensis; type=EST; length=277bp
CTGGGACTTTAGTTAAGCCAGGTATTACAACAGATGAAATTGACAAAGCA
GTTCATCAAATGATTATTGATAATGGAGCATATCCCTCACCTCTTGGCTA
TGGTGGGTTTCCAAAGAGTGTCTGTACATCAGTGAATGAATGTATCTGCC
ACGGAATACCGGATTCCCGTGCACTTGAGGATGGTGATACTATAAATATT
GATGTGACTGTTTATCTAAATGGTTATCATGGTGATACATCACCGACTTT
CTTTTGTGGAGATGTTGATGATGAAGC
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