CF504687

Overview
NameCF504687
Unique NameCF504687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length296
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig268 contig Csv1_Contig268:3..298. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF504687 vs. ExPASy Swiss-Prot
Match: AB8I_ARATH (UPF0051 protein ABCI8, chloroplastic OS=Arabidopsis thaliana GN=ABCI8 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.992e-11
Identity = 44/86 (51.16%), Postives = 49/86 (56.98%), Query Frame = 2 
Query:   44 MNSLLANGISSFSPQPTVDSPKLSKGFHPKLENPKFIVPKSSR----VFKGRADVGYXXXXXXXXXXXXXXXXXXTTQSSDDKIQE 289
            M SLLANGISSFSPQPT DS K  KGFHPK E+ KF  PKS      +FK RADVG                   +T SS DK+Q+
Sbjct:    1 MASLLANGISSFSPQPTSDSSKSPKGFHPKPESLKFPSPKSLNPTRPIFKLRADVG---IDSRPIGASESSSSGTSTVSSTDKLQQ 83
The following BLAST results are available for this feature:
BLAST of CF504687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AB8I_ARATH1.992e-1151.16UPF0051 protein ABCI8, chloroplastic OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-177 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504687 ID=CF504687; Name=CF504687; organism=Citrus sinensis; type=EST; length=296bp
CTCGGGCTGCAGGCTTTTTTTTTCCCCTCTCTCATCCACAACCATGAATT
CTCTGCTAGCTAACGGAATTTCAAGCTTCTCTCCGCAGCCCACCGTTGAT
TCACCAAAACTCTCGAAAGGGTTTCACCCAAAGCTCGAAAATCCCAAGTT
CATAGTCCCCAAAAGCTCAAGGGTCTTCAAGGGCCGTGCGGATGTCGGGT
ACGGGTCAAGCACCATCAGCTCCGACCCTAGCTCTTCGCCAGGTAATTTG
TCAACTACTACCCAGAGCTCCGATGATAAAATTCAAGAAATTTTAC
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