CF504723

Overview
NameCF504723
Unique NameCF504723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length302
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig75 contig Csv1_Contig75:50..351. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504723 vs. ExPASy Swiss-Prot
Match: GPX4_ARATH (Probable glutathione peroxidase 4 OS=Arabidopsis thaliana GN=GPX4 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.350e-33
Identity = 64/85 (75.29%), Postives = 78/85 (91.76%), Query Frame = 3
Query:   48 MGASESVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQ 302
            MGAS SVP++S+++FTVKDS GKD+++SIY+GKVLLIVNVASKCGFT++NY+QLT+LY KYK +  EILAFPCNQFL QEPGTSQ
Sbjct:    1 MGASASVPERSVHQFTVKDSSGKDLNMSIYQGKVLLIVNVASKCGFTETNYTQLTELYRKYKDQDFEILAFPCNQFLYQEPGTSQ 85          
BLAST of CF504723 vs. ExPASy Swiss-Prot
Match: GPX5_ARATH (Probable glutathione peroxidase 5 OS=Arabidopsis thaliana GN=GPX5 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.009e-31
Identity = 64/87 (73.56%), Postives = 77/87 (88.51%), Query Frame = 3
Query:   48 MGASES--VPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQ 302
            MGAS S  V +KSI++FTVKDS GK+VDLS+Y+GKVLL+VNVASKCGFT+SNY+QLT+LY KYK +G  +LAFPCNQFL QEPGTS+
Sbjct:    1 MGASSSSSVSEKSIHQFTVKDSSGKEVDLSVYQGKVLLVVNVASKCGFTESNYTQLTELYRKYKDQGFVVLAFPCNQFLSQEPGTSE 87          
BLAST of CF504723 vs. ExPASy Swiss-Prot
Match: GPX6_ARATH (Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana GN=GPX6 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 7.995e-29
Identity = 62/93 (66.67%), Postives = 75/93 (80.65%), Query Frame = 3
Query:   24 ARHSETKQMGASESVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQ 302
            A+ S ++   A+ S P KS+Y+FTVKD+KG DVDLSIYKGKVLLIVNVAS+CG T+SNY++L  LY KYK  G EILAFPCNQF  QEPGT++
Sbjct:   55 AKLSRSEHSMAASSEP-KSLYDFTVKDAKGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTELAQLYEKYKGHGFEILAFPCNQFGNQEPGTNE 146          
BLAST of CF504723 vs. ExPASy Swiss-Prot
Match: GPX4_NICSY (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.995e-29
Identity = 59/81 (72.84%), Postives = 71/81 (87.65%), Query Frame = 3
Query:   54 ASESVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGT 296
            AS+S   +SIY+FTVKD+KG DVDLSIYKGKVL+IVNVAS+CG T+SNY+ LT++Y KYK +GLEILAFPCNQF  QEPG+
Sbjct:    2 ASQSSKPQSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGS 82          
BLAST of CF504723 vs. ExPASy Swiss-Prot
Match: GPX4_GOSHI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.995e-29
Identity = 59/81 (72.84%), Postives = 71/81 (87.65%), Query Frame = 3
Query:   54 ASESVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGT 296
            AS+S   +SIY+FTVKD+KG DVDLSIYKGKVL+IVNVAS+CG T+SNY+ LT++Y KYK +GLEILAFPCNQF  QEPG+
Sbjct:    2 ASQSSKPQSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGS 82          
BLAST of CF504723 vs. ExPASy Swiss-Prot
Match: GPX4_TOBAC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.364e-28
Identity = 58/81 (71.60%), Postives = 71/81 (87.65%), Query Frame = 3
Query:   54 ASESVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGT 296
            AS+S   +SIY+FTVKD+KG DVDLSIYKGKVL+IVNVAS+CG T+SNY+ +T++Y KYK +GLEILAFPCNQF  QEPG+
Sbjct:    2 ASQSSKPQSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTEIYKKYKDQGLEILAFPCNQFGGQEPGS 82          
BLAST of CF504723 vs. ExPASy Swiss-Prot
Match: GPX4_SOLLC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Solanum lycopersicum GN=GPXle-1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.781e-28
Identity = 60/82 (73.17%), Postives = 70/82 (85.37%), Query Frame = 3
Query:   48 MGASESVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPG 293
            M    S PQ S+Y+FTVKD+KGKDVDLSIYKGKVL+IVNVAS+CG T+SNY+ +T+LY KYK +GLEILAFPCNQF  QEPG
Sbjct:    1 MATQTSNPQ-SVYDFTVKDAKGKDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTELYKKYKDQGLEILAFPCNQFGGQEPG 81          
BLAST of CF504723 vs. ExPASy Swiss-Prot
Match: GPX4_SPIOL (Probable phospholipid hydroperoxide glutathione peroxidase OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.768e-28
Identity = 55/85 (64.71%), Postives = 71/85 (83.53%), Query Frame = 3
Query:   48 MGASESVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQ 302
            M +  S   KS++EF V+D++G DVDLSIYKGKVLLIVNVAS+CG T+SNY+++T+LY KY+  GLEILAFPCNQF  QEPG+++
Sbjct:    1 MASDSSAQPKSVHEFVVRDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTEMTELYEKYRELGLEILAFPCNQFGNQEPGSNE 85          
BLAST of CF504723 vs. ExPASy Swiss-Prot
Match: GPX4_MESCR (Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.154e-27
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 3
Query:   54 ASESVPQ-KSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQ 302
            AS+S  Q KSI++F VKD++G DVDLSIYKGKVLLIVNVAS+CG T+SNY +LT LY +YK KGLEILAFPCNQF  QEPG ++
Sbjct:    2 ASQSTDQPKSIHDFIVKDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYPELTKLYEQYKDKGLEILAFPCNQFGNQEPGDNE 85          
BLAST of CF504723 vs. ExPASy Swiss-Prot
Match: GPX4_CITSI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Citrus sinensis GN=CSA PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.572e-27
Identity = 55/80 (68.75%), Postives = 72/80 (90.00%), Query Frame = 3
Query:   63 SVPQKSIYEFTVKDSKGKDVDLSIYKGKVLLIVNVASKCGFTDSNYSQLTDLYNKYKHKGLEILAFPCNQFLKQEPGTSQ 302
            S  + S+++FTVKD+KG+DVDLSIYKGK+LLIVNVAS+CG T+SNY++L+ LY+KYK++GLEILAFPCNQF  QEPG ++
Sbjct:    3 SQSKTSVHDFTVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 82          
The following BLAST results are available for this feature:
BLAST of CF504723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
GPX4_ARATH5.350e-3375.29Probable glutathione peroxidase 4 OS=Arabidopsis t... [more]
GPX5_ARATH1.009e-3173.56Probable glutathione peroxidase 5 OS=Arabidopsis t... [more]
GPX6_ARATH7.995e-2966.67Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_NICSY7.995e-2972.84Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_GOSHI7.995e-2972.84Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_TOBAC1.364e-2871.60Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_SOLLC1.781e-2873.17Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_SPIOL6.768e-2864.71Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_MESCR1.154e-2771.43Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_CITSI2.572e-2768.75Probable phospholipid hydroperoxide glutathione pe... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-213 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-21_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504723 ID=CF504723; Name=CF504723; organism=Citrus sinensis; type=EST; length=302bp
GTGAGATAAGAAAGCACAGGACAGCACGGCATAGCGAAACAAAGCAAATG
GGTGCTTCAGAATCAGTCCCACAGAAATCAATCTACGAGTTCACTGTCAA
GGATAGCAAGGGCAAGGACGTGGACCTTAGCATTTACAAAGGCAAGGTTC
TTTTGATTGTTAACGTTGCCTCCAAATGTGGTTTTACGGATTCAAATTAC
TCCCAGTTGACTGATCTTTATAACAAATACAAGCATAAAGGTTTGGAGAT
CTTGGCATTTCCGTGCAACCAATTTTTGAAGCAAGAGCCTGGGACAAGTC
AG
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