CF504725

Overview
NameCF504725
Unique NameCF504725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length279
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504725 vs. ExPASy Swiss-Prot
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 41/77 (53.25%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    4 EENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 234
            EE GI  LVE +E GS +GKE A   LLQLC  S K    ++REG IPPLVAL+++G+ R K KA+ LL Y +  RQ
Sbjct:  625 EEGGIPVLVEVVELGSARGKENATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFKAHRQ 701          
BLAST of CF504725 vs. ExPASy Swiss-Prot
Match: PUB3_ARATH (U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.889e-14
Identity = 42/77 (54.55%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 VEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 231
            V E GI  LVE ++ GS +GKE A   LLQLC  S K   L+++EG IPPLVALSQ+G+ RAK KA+ LL + R  R
Sbjct:  675 VREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTLVLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQR 751          
BLAST of CF504725 vs. ExPASy Swiss-Prot
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.955e-11
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    4 EENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETL 207
            +E GI  LVE +E GS +GKE A   LLQL   S +   ++++EG +PPLVALSQ+G+ RA+ K +TL
Sbjct:  744 QEGGIPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREKVQTL 811          
The following BLAST results are available for this feature:
BLAST of CF504725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PUB2_ARATH1.108e-1453.25U-box domain-containing protein 2 OS=Arabidopsis t... [more]
PUB3_ARATH1.889e-1454.55U-box domain-containing protein 3 OS=Arabidopsis t... [more]
PUB4_ARATH1.955e-1150.00U-box domain-containing protein 4 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-215 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-21_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504725 ID=CF504725; Name=CF504725; organism=Citrus sinensis; type=EST; length=279bp
GTTGAGGAAAACGGGATTGCTGCTCTTGTGGAGGCTATTGAAGATGGGAG
TGTTAAGGGGAAGGAGTTTGCCGTGTTGACTTTGTTGCAGTTGTGCGCTG
AGAGTGTGAAGAACAGGGGATTGCTGGTTCGAGAAGGAGGGATTCCCCCG
CTGGTTGCCCTTTCCCAAACTGGGAGCGTGAGAGCTAAGCATAAGGCTGA
GACGCTTCTTGGGTATCTGAGAGAACCAAGACAAGAGGGTCCGTCATCAA
GTCCTTGAGAGAATGCATAGTTTAATTAC
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