CF504737

Overview
NameCF504737
Unique NameCF504737
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length286
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13562 contig Csv1_Contig13562:57..342. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504737 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.247e-38
Identity = 76/82 (92.68%), Postives = 81/82 (98.78%), Query Frame = 1
Query:   28 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHE 273
            MAFAKAQK+KAYFKRYQVK+KRRREGKTDYRARIRLINQDKNKYNTPKYRFVVR +NKDITAQIISASIAGD+VLASAY+HE
Sbjct:    1 MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRTSNKDITAQIISASIAGDLVLASAYSHE 82          
BLAST of CF504737 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 1.476e-35
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 1
Query:   28 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHE 273
            M F K+ KS AYFKRYQVK++RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI AQI+SASIAGDIV ASAYAHE
Sbjct:    1 MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHE 82          
BLAST of CF504737 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.928e-35
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 1
Query:   28 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHE 273
            M F K+ KS AYFKRYQVK++RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI AQI+SASIAGDIV ASAYAHE
Sbjct:    1 MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHE 82          
BLAST of CF504737 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 2.357e-33
Identity = 65/80 (81.25%), Postives = 75/80 (93.75%), Query Frame = 1
Query:   34 FAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHE 273
            F K QK+ AY+KR+QVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFVVRFTNKDITAQI+ A+IAGDIV+A+AY+HE
Sbjct:    4 FVKTQKTNAYYKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHE 83          
BLAST of CF504737 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.858e-33
Identity = 65/80 (81.25%), Postives = 74/80 (92.50%), Query Frame = 1
Query:   34 FAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHE 273
            F K QK+ AY KR+QVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFVVRFTNKDITAQI+ A+IAGDIV+A+AY+HE
Sbjct:    4 FVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHE 83          
BLAST of CF504737 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.186e-30
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 1
Query:   34 FAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHE 273
            F K QK+ AYFKR+QVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFV   TNKDITAQI+ A+IAGDIV+A+AY+HE
Sbjct:    7 FVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHE 83          
BLAST of CF504737 vs. ExPASy Swiss-Prot
Match: RL5_SUBDO (60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.697e-29
Identity = 62/82 (75.61%), Postives = 67/82 (81.71%), Query Frame = 1
Query:   28 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHE 273
            M F K  K+KAYFKRYQVK++RRREGKTDYRAR RL+ QDKNKYNTPKYR V+RFTN DI  QII A I GD VL SAYAHE
Sbjct:    1 MPFVKVIKNKAYFKRYQVKFRRRREGKTDYRARKRLVVQDKNKYNTPKYRIVIRFTNTDIICQIIYAKIEGDKVLVSAYAHE 82          
BLAST of CF504737 vs. ExPASy Swiss-Prot
Match: RL5_STYCL (60S ribosomal protein L5 OS=Styela clava GN=RPL5 PE=3 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 2.697e-29
Identity = 60/82 (73.17%), Postives = 67/82 (81.71%), Query Frame = 1
Query:   28 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHE 273
            M F K  K+KAYFKRYQVKYKRRR+GKTDY AR RL+ QDKNKYNTPKYR +VRFTNKDI  QI  A I GD+V+ +AYAHE
Sbjct:    1 MGFVKVVKNKAYFKRYQVKYKRRRQGKTDYFARKRLVVQDKNKYNTPKYRMIVRFTNKDIVCQIAYARIEGDVVICAAYAHE 82          
BLAST of CF504737 vs. ExPASy Swiss-Prot
Match: RL5_HELAN (60S ribosomal protein L5 OS=Helianthus annuus GN=RPL5A PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.133e-27
Identity = 58/82 (70.73%), Postives = 66/82 (80.49%), Query Frame = 1
Query:   28 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHE 273
            M F K  K+K YFKRYQVK+KRRREGKTDY AR RLI QDKNKYNTPKYR VVRF+N+DIT Q+  + I GD +L +AYAHE
Sbjct:    1 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYFARKRLIAQDKNKYNTPKYRLVVRFSNRDITCQVAYSRIEGDKILCAAYAHE 82          
BLAST of CF504737 vs. ExPASy Swiss-Prot
Match: RL5_CAEBR (60S ribosomal protein L5 OS=Caenorhabditis briggsae GN=rpl-5 PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.480e-27
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = 1
Query:   28 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHE 273
            M   K  K+KAYFKRYQVK KRRREGKTDY AR RL  QDKNKYNTPKYR +VR TNKDI AQ+  + I GD+V+ASAYAHE
Sbjct:    1 MGLVKVIKNKAYFKRYQVKLKRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRLTNKDIVAQLAYSKIEGDVVVASAYAHE 82          
The following BLAST results are available for this feature:
BLAST of CF504737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL5_CUCSA9.247e-3892.6860S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL52_ARATH1.476e-3586.5960S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL51_ARATH1.928e-3586.5960S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL51_ORYSI2.357e-3381.2560S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSJ6.858e-3381.2560S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL52_ORYSJ3.186e-3078.7560S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL5_SUBDO2.697e-2975.6160S ribosomal protein L5 OS=Suberites domuncula GN... [more]
RL5_STYCL2.697e-2973.1760S ribosomal protein L5 OS=Styela clava GN=RPL5 P... [more]
RL5_HELAN1.133e-2770.7360S ribosomal protein L5 OS=Helianthus annuus GN=R... [more]
RL5_CAEBR1.480e-2771.9560S ribosomal protein L5 OS=Caenorhabditis briggsa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-227 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-21_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504737 ID=CF504737; Name=CF504737; organism=Citrus sinensis; type=EST; length=286bp
GCTGCTTCTACACTTTGAGCTTCAGCAATGGCCTTTGCCAAAGCTCAAAA
GTCAAAAGCTTACTTTAAGCGATATCAAGTTAAGTACAAGAGAAGGCGAG
AGGGAAAGACTGACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAA
AACAAGTACAACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAA
AGATATCACTGCACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCC
TTGCATCTGCTTATGCCCATGAGCCTTCCCCGTTAT
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