CF504766 | Citrus Genome Database

Overview


Name	CF504766
Unique Name	CF504766
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	365

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF504766 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.084e-25
Identity = 53/70 (75.71%), Postives = 57/70 (81.43%), Query Frame = 2

Query:  149 HHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDAC------GWCWPFG 340
            HHGKDYVDPPPAPL+DM ELK WSFYRALIAEF+ATLLFLYV+VATVIGHKKQ+  C      G  W FG
Sbjct:   12 HHGKDYVDPPPAPLLDMGELKSWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWAFG 81

[Close]

BLAST of CF504766 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.643e-24
Identity = 52/69 (75.36%), Postives = 57/69 (82.61%), Query Frame = 2

Query:  152 HGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGW------CWPFG 340
            HGKDYVDPPPAPL+DMAELKLWSFYRA+IAEF+ATLLFLYV+VATVIGHK Q+  CG        W FG
Sbjct:   11 HGKDYVDPPPAPLLDMAELKLWSFYRAIIAEFIATLLFLYVTVATVIGHKNQTGPCGGVGLLGIAWAFG 79

[Close]

BLAST of CF504766 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.922e-23
Identity = 49/71 (69.01%), Postives = 56/71 (78.87%), Query Frame = 2

Query:  146 HHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDAC------GWCWPFG 340
            H HGKDYVDPPPAP  DM ELKLWSF+RA IAEF+ATLLFLY++VATVIG+KK++D C      G  W FG
Sbjct:   13 HQHGKDYVDPPPAPFFDMGELKLWSFWRAAIAEFIATLLFLYITVATVIGYKKETDPCASVGLLGIAWSFG 83

[Close]

BLAST of CF504766 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.910e-23
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 2

Query:  149 HHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDA 316
            H GKDY DPPPAPL+D  EL  WS YRA+IAEFVATLLFLY++VATVIG+K Q+DA
Sbjct:   11 HEGKDYSDPPPAPLVDAEELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDA 66

HSP 2 Score: 35.039 bits (79), Expect = 8.910e-23
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  321 GGVGLLGIAWAFGGM 365
            GGVG+LGIAWAFGGM
Sbjct:   76 GGVGVLGIAWAFGGM 90

[Close]

BLAST of CF504766 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 7.311e-22
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 2

Query:  158 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDA 316
            KDY DPPPAPL+D AEL  WS YRA+IAEF+ATLLFLYV+VATVIG+K Q+DA
Sbjct:   19 KDYTDPPPAPLVDAAELGSWSLYRAVIAEFIATLLFLYVTVATVIGYKHQTDA 71

HSP 2 Score: 35.039 bits (79), Expect = 7.311e-22
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  321 GGVGLLGIAWAFGGM 365
            GGVG+LGIAWAFGGM
Sbjct:   83 GGVGVLGIAWAFGGM 97

[Close]

BLAST of CF504766 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 7.313e-22
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 2

Query:  158 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDA 316
            KDY DPPPAPLID AEL  WS YRA+IAEF+ATLLFLY++VATVIG+K Q+DA
Sbjct:   19 KDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDA 71

HSP 2 Score: 35.039 bits (79), Expect = 7.313e-22
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  321 GGVGLLGIAWAFGGM 365
            GGVG+LGIAWAFGGM
Sbjct:   81 GGVGVLGIAWAFGGM 95

[Close]

BLAST of CF504766 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 7.313e-22
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 2

Query:  158 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDA 316
            KDY DPPPAPLID AEL  WS YRA+IAEF+ATLLFLY++VATVIG+K Q+DA
Sbjct:   19 KDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDA 71

HSP 2 Score: 35.039 bits (79), Expect = 7.313e-22
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  321 GGVGLLGIAWAFGGM 365
            GGVG+LGIAWAFGGM
Sbjct:   81 GGVGVLGIAWAFGGM 95

[Close]

BLAST of CF504766 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 7.315e-22
Identity = 41/53 (77.36%), Postives = 48/53 (90.57%), Query Frame = 2

Query:  158 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDA 316
            +DY+DPPPAPL+D+ EL  WS YRALIAEFVATLLFLYV+VATVIG+K Q+DA
Sbjct:   16 RDYIDPPPAPLVDVDELGKWSLYRALIAEFVATLLFLYVTVATVIGYKHQTDA 68

HSP 2 Score: 35.039 bits (79), Expect = 7.315e-22
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  321 GGVGLLGIAWAFGGM 365
            GGVG+LGIAWAFGGM
Sbjct:   78 GGVGVLGIAWAFGGM 92

[Close]

BLAST of CF504766 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.611e-21
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 2

Query:  158 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDA 316
            KDY DPPPAPLID  EL  WS YRA+IAEF+ATLLFLY++VATVIG+K Q+DA
Sbjct:   18 KDYTDPPPAPLIDAEELTQWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDA 70

HSP 2 Score: 35.4242 bits (80), Expect = 1.611e-21
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  321 GGVGLLGIAWAFGGM 365
            GGVG+LGIAWAFGGM
Sbjct:   80 GGVGILGIAWAFGGM 94

[Close]

BLAST of CF504766 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.095e-21
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 2

Query:  158 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDA 316
            KDY DPPPAPLID  EL  WS YRA+IAEF+ATLLFLY++VATVIG+K Q+DA
Sbjct:   19 KDYTDPPPAPLIDADELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDA 71

HSP 2 Score: 35.4242 bits (80), Expect = 2.095e-21
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  321 GGVGLLGIAWAFGGM 365
            GGVG+LGIAWAFGGM
Sbjct:   81 GGVGILGIAWAFGGM 95

The following BLAST results are available for this feature:

BLAST of CF504766 vs. ExPASy Swiss-Prot

BLAST of CF504766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40


Match Name	E-value	Identity	Description
PIP27_ARATH	9.084e-25	75.71	Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7...	[more]
PIP28_ARATH	2.643e-24	75.36	Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ...	[more]
PIP1_ATRCA	2.922e-23	69.01	Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1	[more]
PIP25_MAIZE	8.910e-23	75.00	Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1	[more]
PIP22_MAIZE	7.311e-22	77.36	Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1	[more]
PIP21_ORYSJ	7.313e-22	77.36	Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j...	[more]
PIP21_MAIZE	7.313e-22	77.36	Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2	[more]
PIP24_ORYSJ	7.315e-22	77.36	Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G...	[more]
PIP24_MAIZE	1.611e-21	75.47	Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1	[more]
PIP23_MAIZE	2.095e-21	75.47	Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_120000-256 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-21_E03 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504766 ID=CF504766; Name=CF504766; organism=Citrus sinensis; type=EST; length=365bp
CTTTTCTCGAGACCAGAGAGGCTGTGTGCTTTTCTTTGATTGTTCCAAAG
AGAAATCAAAATCTTGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
AGAAAGATGTCAAAGGAAGTGAATGAAGAAGGACAAACTCACCGCCATCA
CCATGGCAAGGACTACGTGGACCCACCACCAGCACCACTCATTGACATGG
CTGAGCTCAAGCTCTGGTCCTTTTACAGAGCTCTCATAGCCGAGTTCGTG
GCCACTCTCCTCTTCCTCTACGTCAGTGTTGCCACTGTCATTGGCCACAA
GAAACAAAGTGATGCCTGTGGGTGGTGTTGGCCTTTTGGGTATTGCATGG
GCCTTTGGTGGCATG