CF504789

Overview
NameCF504789
Unique NameCF504789
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length273
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504789 vs. ExPASy Swiss-Prot
Match: TIF4B_ARATH (Protein TIFY 4B OS=Arabidopsis thaliana GN=TIFY4B PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.833e-15
Identity = 45/101 (44.55%), Postives = 54/101 (53.47%), Query Frame = 1 
Query:    7 LTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKXXXXXXXXXXXXXXRRKLYSVPSHSAVTVKETCEP----------------APCRRQDAP 261
            LTE+DISQ+TREDCR++LKEKGMRRPSWNKSQAIQQV+ LK              R+ L S P +         EP                  C R+D+P
Sbjct:   19 LTEEDISQLTREDCRKFLKEKGMRRPSWNKSQAIQQVLSLKALYEPGDDSGAGILRKILVSQPPNPPRVTTTLIEPRNELEACGRIPLQEDDGACHRRDSP 119
[Close]
BLAST of CF504789 vs. ExPASy Swiss-Prot
Match: TIF4A_ARATH (Protein TIFY 4A OS=Arabidopsis thaliana GN=TIFY4A PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.115e-14
Identity = 40/77 (51.95%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    7 LTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKXXXXXXXXXXXXXXRRKLYSVPSHSAVTVKETCEPA 237
            LTE+DISQ+TREDCR++LK+KGMRRPSWNKSQAIQQV+ LK              R+ L S P +         EP+
Sbjct:   19 LTEEDISQLTREDCRKFLKDKGMRRPSWNKSQAIQQVLSLKALYEPGDDSGAGIFRKILVSQPVNPPRVTTTLIEPS 95
The following BLAST results are available for this feature:
BLAST of CF504789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TIF4B_ARATH3.833e-1544.55Protein TIFY 4B OS=Arabidopsis thaliana GN=TIFY4B ... [more]
TIF4A_ARATH1.115e-1451.95Protein TIFY 4A OS=Arabidopsis thaliana GN=TIFY4A ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-279 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-21_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504789 ID=CF504789; Name=CF504789; organism=Citrus sinensis; type=EST; length=273bp
CACCAGCTCACTGAAGATGACATTTCTCAGGTCACTCGTGAAGATTGTCG
CCGATACCTCAAAGAAAAAGGCATGAGGAGGCCATCGTGGAACAAATCGC
AGGCGATCCAGCAAGTGATCTGCCTCAAGACGCTGCTTGAAACAACGACG
GATACCGAGGCCACTGAGGCACGAAGGAAACTCTACAGTGTCCCTTCACA
TTCGGCTGTTACAGTTAAGGAAACATGTGAACCGGCTCCTTGTCGGCGTC
AGGATGCCCCCATGCCTGATTTT
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