CF504799

Overview
NameCF504799
Unique NameCF504799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length381
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:55..432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504799 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.511e-27
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = 1
Query:  148 GELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAP 378
            G++G++I+R MF D+L +RN+  CP +GFYTYDAFI AA+AFPGFG +G+ T RKREIAAF AQT HETTGGW  AP
Sbjct:   63 GDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAP 139          
BLAST of CF504799 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.854e-26
Identity = 56/96 (58.33%), Postives = 66/96 (68.75%), Query Frame = 1
Query:   91 CGSRRCVR*T*YLATGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAP 378
            CG   C        T   GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FPGFG SG+ T RKREIAAFFAQT HETTGGW  AP
Sbjct:   54 CGPGNCQSQCPGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAP 149          
BLAST of CF504799 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.854e-26
Identity = 52/77 (67.53%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  148 GELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAP 378
            G+L  IISR  F+D+L +RND  CPARGFYTYDAFI AA++FPGFG +G+   RK+EIAAFF QT HETTGGW  AP
Sbjct:   69 GDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAP 145          
BLAST of CF504799 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 3.728e-26
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 1
Query:  133 TGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAP 378
            T   GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FPGFG SG+ T RKREIAAFFAQT HETTGGW  AP
Sbjct:   73 TPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAP 154          
BLAST of CF504799 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.358e-26
Identity = 53/79 (67.09%), Postives = 61/79 (77.22%), Query Frame = 1
Query:  142 DGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAP 378
            D G L  II +  F+ LL +RNDARCPA GFYTY+AFI AA+ FP FGN+G++ MRKREIAAF  QT HETTGGW DAP
Sbjct:   85 DDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAP 163          
BLAST of CF504799 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 1.850e-25
Identity = 50/77 (64.94%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  148 GELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAP 378
            G+L  IIS   F+D+L +RNDA CPARGFYTY+AFI AA++FPGFG +G+   RK+E+AAFF QT HETTGGW  AP
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAP 160          
BLAST of CF504799 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.671e-24
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 1
Query:  136 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAP 378
            G  GG +  ++S+E+FE LL +RNDA CPARGFYTYDA + AA AFP F  +G++  RKRE+AAF  QT HETTGGW  AP
Sbjct:   80 GGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAP 160          
BLAST of CF504799 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.489e-24
Identity = 49/83 (59.04%), Postives = 64/83 (77.11%), Query Frame = 1
Query:  133 TGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPG 381
            TG+   ++G I++ ++F ++L  RND RCPA+GFYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HETTGG   A G
Sbjct:   12 TGSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSADG 94          
BLAST of CF504799 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.489e-24
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 1
Query:  133 TGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAP 378
            T + GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   RKRE+AAF AQT HETTGGW  AP
Sbjct:   73 TPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAP 154          
BLAST of CF504799 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.489e-24
Identity = 49/84 (58.33%), Postives = 61/84 (72.62%), Query Frame = 1
Query:  127 LATGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAP 378
            +A GT  G +  I+SR  F+ +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   +KRE+AAF AQT HETTGGW  AP
Sbjct:   16 MAIGTARGSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAP 99          
The following BLAST results are available for this feature:
BLAST of CF504799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CHIB_VITVI7.511e-2766.23Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI2_TOBAC2.854e-2658.33Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI2_BRANA2.854e-2667.53Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI1_TOBAC3.728e-2664.63Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI6_POPTR6.358e-2667.09Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIB_ARATH1.850e-2564.94Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI9_ORYSJ2.671e-2460.49Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_SOLLC3.489e-2459.04Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_SECCE3.489e-2459.76Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI2_HORVU3.489e-2458.3326 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-289 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-21_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504799 ID=CF504799; Name=CF504799; organism=Citrus sinensis; type=EST; length=381bp
ATAACTCTTGCTTTCAAAATGAGGCTCATTGGGTCCTTACTAATTTTCTC
TCTAGTTTTATCTTTTGTACTAGGAGGTTCAGCACAGAATTGTGGAAGCC
GGCGTTGTGTGCGGTGAACGTGATACCTGGCCACCGGGACGGATGGCGGT
GAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCGTA
TAGAAATGATGCCCGATGCCCTGCCAGAGGCTTCTACACTTATGATGCTT
TTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGGAAATGAA
ACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGA
AACTACTGGGGGATGGACCGATGCACCTGGT
back to top