CF504816

Overview
NameCF504816
Unique NameCF504816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig748 contig Csv1_Contig748:487..978. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP56_PONAB (Nucleolar protein 56 OS=Pongo abelii GN=NOP56 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 9.578e-66
Identity = 119/162 (73.46%), Postives = 149/162 (91.98%), Query Frame = 3
Query:    3 IVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERL 488
            I++A ++SMG D+SA+DL+N++ F+ RV+ LSEYR+ L+ YL +KM+ +AP+L++LIGE VGARLI+HAGSLTNLAK P+ST+QILGAEKALFRALKTRGNTPKYGLIFHS+FIGRA+A+NKGR++RYLANKCSIASRIDCF+E  T++FGEKLREQVEERL
Sbjct:  244 ILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERL 405          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP56_MOUSE (Nucleolar protein 56 OS=Mus musculus GN=Nop56 PE=1 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 9.578e-66
Identity = 119/162 (73.46%), Postives = 149/162 (91.98%), Query Frame = 3
Query:    3 IVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERL 488
            I++A ++SMG D+SA+DL+N++ F+ RV+ LSEYR+ L+ YL +KM+ +AP+L++LIGE VGARLI+HAGSLTNLAK P+ST+QILGAEKALFRALKTRGNTPKYGLIFHS+FIGRA+A+NKGR++RYLANKCSIASRIDCF+E  T++FGEKLREQVEERL
Sbjct:  244 ILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERL 405          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP56_MACFA (Nucleolar protein 56 OS=Macaca fascicularis GN=NOP56 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 9.578e-66
Identity = 119/162 (73.46%), Postives = 149/162 (91.98%), Query Frame = 3
Query:    3 IVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERL 488
            I++A ++SMG D+SA+DL+N++ F+ RV+ LSEYR+ L+ YL +KM+ +AP+L++LIGE VGARLI+HAGSLTNLAK P+ST+QILGAEKALFRALKTRGNTPKYGLIFHS+FIGRA+A+NKGR++RYLANKCSIASRIDCF+E  T++FGEKLREQVEERL
Sbjct:  244 ILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERL 405          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP56_HUMAN (Nucleolar protein 56 OS=Homo sapiens GN=NOP56 PE=1 SV=4)

HSP 1 Score: 248.825 bits (634), Expect = 9.578e-66
Identity = 119/162 (73.46%), Postives = 149/162 (91.98%), Query Frame = 3
Query:    3 IVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERL 488
            I++A ++SMG D+SA+DL+N++ F+ RV+ LSEYR+ L+ YL +KM+ +AP+L++LIGE VGARLI+HAGSLTNLAK P+ST+QILGAEKALFRALKTRGNTPKYGLIFHS+FIGRA+A+NKGR++RYLANKCSIASRIDCF+E  T++FGEKLREQVEERL
Sbjct:  244 ILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERL 405          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP56_BOVIN (Nucleolar protein 56 OS=Bos taurus GN=NOP56 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 9.578e-66
Identity = 119/162 (73.46%), Postives = 149/162 (91.98%), Query Frame = 3
Query:    3 IVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERL 488
            I++A ++SMG D+SA+DL+N++ F+ RV+ LSEYR+ L+ YL +KM+ +AP+L++LIGE VGARLI+HAGSLTNLAK P+ST+QILGAEKALFRALKTRGNTPKYGLIFHS+FIGRA+A+NKGR++RYLANKCSIASRIDCF+E  T++FGEKLREQVEERL
Sbjct:  244 ILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERL 405          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP56_SCHPO (Nucleolar protein 56 OS=Schizosaccharomyces pombe GN=nop56 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 8.108e-65
Identity = 120/163 (73.62%), Postives = 144/163 (88.34%), Query Frame = 3
Query:    3 IVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLD 491
            I+ AGK SMGQD+S +DL N+  FA+RV+ LS YRK+L+ YLV KMN +APNLA LIGE+VGARLISHAGSLTNL+KCP+ST+QILGAEKALFRALKTRGNTPKYG+I+HSSFIG+A A+NKGR++R+LANKCSIASRID F++  TT FG+ LR QVEERL+
Sbjct:  247 IINAGKVSMGQDISEIDLENILSFAERVIKLSNYRKQLHNYLVQKMNVVAPNLAELIGEMVGARLISHAGSLTNLSKCPASTVQILGAEKALFRALKTRGNTPKYGIIYHSSFIGKAGAKNKGRISRFLANKCSIASRIDNFSDAPTTAFGQVLRRQVEERLN 409          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: YZVL_CAEEL (Uncharacterized NOP5 family protein K07C5.4 OS=Caenorhabditis elegans GN=K07C5.4 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 5.091e-59
Identity = 109/163 (66.87%), Postives = 139/163 (85.28%), Query Frame = 3
Query:    3 IVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLD 491
            I+EA + SMG D+S +DL N++ FA RV  L EYR++L+EY+  +M+  AP+L++LIGE VGARLISHAGSLTNLAK P+ST+QILGAEKALFRALKTR NTPKYGL+FHSSFIG+A  +NKGR++RYLANKCSIA+R+DCF+E   + +GE LR+QVE+RL+
Sbjct:  250 IIEAARTSMGMDISDLDLENIKRFAARVSSLMEYRQQLHEYIKDRMDHCAPSLSALIGEQVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRSNTPKYGLLFHSSFIGKAGTKNKGRVSRYLANKCSIAARVDCFSETPVSTYGEFLRQQVEDRLE 412          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP56_YEAST (Nucleolar protein 56 OS=Saccharomyces cerevisiae GN=NOP56 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 3.300e-58
Identity = 106/163 (65.03%), Postives = 141/163 (86.50%), Query Frame = 3
Query:    3 IVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLD 491
            +++  + SMGQD+S  D+ NV +FAQRV  L++YR++LY+YL  KM+ +APNL+ LIGEV+GARLISHAGSLTNL+K  +ST+QILGAEKALFRALKT+GNTPKYGLI+HS FI +ASA+NKGR++RYLANKCS+ASRID ++E+ + +FG  L++QVE+RL+
Sbjct:  251 VIDNARISMGQDISETDMENVCVFAQRVASLADYRRQLYDYLCEKMHTVAPNLSELIGEVIGARLISHAGSLTNLSKQAASTVQILGAEKALFRALKTKGNTPKYGLIYHSGFISKASAKNKGRISRYLANKCSMASRIDNYSEEPSNVFGSVLKKQVEQRLE 413          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP56_DICDI (Nucleolar protein 56 OS=Dictyostelium discoideum GN=nop56 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 8.146e-49
Identity = 96/162 (59.26%), Postives = 127/162 (78.40%), Query Frame = 3
Query:    3 IVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERL 488
            ++ A KASMG D+S +DLV V  FA RV+ L EYR  L +YL  KM DIAPNL++L+G+ +GA+LIS AGSLT+LAK P+ST+QILGAEKALFRA+K RG TPKYG+IF++S +  +  +NKGR+AR L+NK SIA+RIDCF++  T  FG  L++QV +R+
Sbjct:  243 VLSAAKASMGGDISQIDLVTVMHFADRVISLDEYRTNLTQYLAKKMQDIAPNLSALVGDRIGAKLISRAGSLTSLAKYPASTVQILGAEKALFRAMKVRGKTPKYGIIFNASAVS-SETKNKGRIARCLSNKISIATRIDCFSDNPTAKFGVALKQQVADRI 403          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_PICST (Nucleolar protein 58 OS=Pichia stipitis GN=NOP58 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.878e-45
Identity = 88/164 (53.66%), Postives = 130/164 (79.27%), Query Frame = 3
Query:    3 IVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEK--NTTIFGEKLREQVEERL 488
            +  A + SMG +++A+DL N++  A++++D + YR++L  YL ++M  IAPNL +L+GE+VGARLI+HAGSLT+LAK P+ST+QILGAEKALFRALKT+ +TPKYGL++H+S +G+AS +NKG++AR LA K ++A R D  AE+  ++  FG ++R +VE RL
Sbjct:  235 VKSAAEVSMGTEITAIDLENIRALAEQIVDFAAYREQLSNYLSSRMKAIAPNLTALVGELVGARLIAHAGSLTSLAKAPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQASGKNKGKIARVLAAKAAVALRYDSLAEERDDSGDFGLEVRAKVESRL 398          
The following BLAST results are available for this feature:
BLAST of CF504816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
NOP56_PONAB9.578e-6673.46Nucleolar protein 56 OS=Pongo abelii GN=NOP56 PE=2... [more]
NOP56_MOUSE9.578e-6673.46Nucleolar protein 56 OS=Mus musculus GN=Nop56 PE=1... [more]
NOP56_MACFA9.578e-6673.46Nucleolar protein 56 OS=Macaca fascicularis GN=NOP... [more]
NOP56_HUMAN9.578e-6673.46Nucleolar protein 56 OS=Homo sapiens GN=NOP56 PE=1... [more]
NOP56_BOVIN9.578e-6673.46Nucleolar protein 56 OS=Bos taurus GN=NOP56 PE=2 S... [more]
NOP56_SCHPO8.108e-6573.62Nucleolar protein 56 OS=Schizosaccharomyces pombe ... [more]
YZVL_CAEEL5.091e-5966.87Uncharacterized NOP5 family protein K07C5.4 OS=Cae... [more]
NOP56_YEAST3.300e-5865.03Nucleolar protein 56 OS=Saccharomyces cerevisiae G... [more]
NOP56_DICDI8.146e-4959.26Nucleolar protein 56 OS=Dictyostelium discoideum G... [more]
NOP58_PICST1.878e-4553.66Nucleolar protein 58 OS=Pichia stipitis GN=NOP58 P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-307 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-22_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504816 ID=CF504816; Name=CF504816; organism=Citrus sinensis; type=EST; length=492bp
AGATTGTGGAGGCTGGCAAAGCATCAATGGGACAGGATTTGTCTGCAGTT
GACTTAGTTAATGTCCAGATGTTTGCTCAAAGGGTGATGGACCTCTCTGA
GTACAGGAAGAAACTTTATGAGTATCTGGTTACTAAAATGAATGATATTG
CACCCAATTTGGCCTCCTTGATTGGTGAAGTTGTTGGGGCTCGGTTGATT
TCTCATGCTGGTAGTCTCACAAATCTGGCTAAGTGTCCATCTTCTACCCT
TCAGATCCTTGGTGCTGAGAAAGCACTCTTCAGAGCATTAAAAACTCGAG
GAAACACACCAAAGTATGGTCTGATTTTCCACTCATCTTTCATTGGTCGA
GCTTCTGCCCGGAACAAGGGCCGTATGGCTCGATACCTTGCAAACAAGTG
TTCTATTGCATCTCGCATTGACTGTTTTGCAGAAAAAAACACTACCATTT
TTGGGGAGAAACTTCGTGAACAAGTTGAAGAGCGGCTGGACT
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