CF504835

Overview
NameCF504835
Unique NameCF504835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length224
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504835 vs. ExPASy Swiss-Prot
Match: PP163_ARATH (Pentatricopeptide repeat-containing protein At2g18940 OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.094e-23
Identity = 50/73 (68.49%), Postives = 59/73 (80.82%), Query Frame = 2 
Query:    2 KIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEML 220
            +IE  I  G+IFPSWMLLRTL+L NFKCRAL G ERAF   +KHGYKPD+VIFNSMLSI  +N+MYD+A  +L
Sbjct:  582 RIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGIL 654
The following BLAST results are available for this feature:
BLAST of CF504835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP163_ARATH5.094e-2368.49Pentatricopeptide repeat-containing protein At2g18... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-326 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-22_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504835 ID=CF504835; Name=CF504835; organism=Citrus sinensis; type=EST; length=224bp
GAAGATTGAGAAGGAAATTTATGCTGGTCGTATCTTTCCTAGCTGGATGC
TTTTGAGAACCCTCATTCTTGTAAACTTCAAATGCAGGGCTCTGCAGGGC
ATGGAGAGGGCATTTCAGGAATTGCAAAAGCATGGATACAAACCTGATTT
GGTTATATTCAATTCTATGCTTTCAATTTGTGCCAAGAACAGCATGTATG
ACCGGGCTAATGAGATGCTGCACT
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