CF504857

Overview
NameCF504857
Unique NameCF504857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length406
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13343 contig Csv1_Contig13343:307..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504857 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.839e-50
Identity = 95/135 (70.37%), Postives = 109/135 (80.74%), Query Frame = 1
Query:    4 LLGLCKGSTIGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTD-NSSSLVVPAMQNVFTALKKAGLHKR 405
            LL  C G  +GVCYGR+ADDLPTP KV QL++QHNIKY+RIYD N QVLKAF NT +ELMIG+PNSDL  F+Q QSN D+WLKNS+LPYYP  KITYITVGAE T+    N+SS VVPAMQNV TAL+K GL +R
Sbjct:   17 LLDCCYGGKVGVCYGRSADDLPTPSKVVQLIQQHNIKYVRIYDYNSQVLKAFGNTSIELMIGVPNSDLNAFSQSQSNVDTWLKNSVLPYYPTTKITYITVGAESTDDPHINASSFVVPAMQNVLTALRKVGLSRR 151          
BLAST of CF504857 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 9.132e-49
Identity = 88/135 (65.19%), Postives = 115/135 (85.19%), Query Frame = 1
Query:    1 ALLGLCKGSTIGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGLHKR 405
            A L     S IG+CYGRNAD+LP+P++V++L++  NIK++RIYD+NI VLKAFANTG+ELMIG+PN+DLL FAQFQSN D+WL N+ILPYYP+ KIT I+VG EVTE+ DN++ LV+PAM+N+ TALKK+GL K+
Sbjct:   17 AFLNFGMASKIGICYGRNADNLPSPNRVSELIQHLNIKFVRIYDANIDVLKAFANTGIELMIGVPNADLLAFAQFQSNVDTWLSNNILPYYPSTKITSISVGLEVTEAPDNATGLVLPAMRNIHTALKKSGLDKK 151          
BLAST of CF504857 vs. ExPASy Swiss-Prot
Match: E13B_PEA (Glucan endo-1,3-beta-glucosidase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.196e-25
Identity = 55/125 (44.00%), Postives = 82/125 (65.60%), Query Frame = 1
Query:   31 IGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDNS--SSLVVPAMQNVFTALKKAGLH 399
            IG+CYG   ++LP  ++V  L K +NIK +R+YD N   L A  ++G+EL++GIPNSDL   A  Q +A  W++ ++L +YP+ KI YI VG EV+    +S  +  V+PA QNV+ A++  GLH
Sbjct:   34 IGICYGMMGNNLPPANEVIALYKANNIKRMRLYDPNQPALNALRDSGIELILGIPNSDLQTLATNQDSARQWVQRNVLNFYPSVKIKYIAVGNEVSPVGGSSWLAQYVLPATQNVYQAIRAQGLH 158          
BLAST of CF504857 vs. ExPASy Swiss-Prot
Match: GUB_NICPL (Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 7.785e-24
Identity = 58/140 (41.43%), Postives = 85/140 (60.71%), Query Frame = 1
Query:    4 LLGLCKGST-------IGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDNSS--SLVVPAMQNVFTALKKAGL 396
            LLGL   ST       +GVCYG   ++LP   +V QL K  NI+ +R+YD N   L+A   + +E+M+G+PNSDL   A   SNA++W++ ++  ++PA K  YI VG EV+  T  SS    ++PAM+N+  A+  AGL
Sbjct:   17 LLGLLVSSTEIVGAQSVGVCYGMLGNNLPPASQVVQLYKSKNIRRMRLYDPNQAALQALRGSNIEVMLGVPNSDLQNIAANPSNANNWVQRNVRNFWPAVKFRYIAVGNEVSPVTGTSSLTRYLLPAMRNIRNAISSAGL 156          
BLAST of CF504857 vs. ExPASy Swiss-Prot
Match: E13B_PHAVU (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.785e-24
Identity = 52/125 (41.60%), Postives = 83/125 (66.40%), Query Frame = 1
Query:   31 IGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDNS--SSLVVPAMQNVFTALKKAGLH 399
            IGVCYG   ++LP+ ++V  L + +NI+ +R+YD N   L+A  N+G+EL++G+PNSDL   A     A  W++ ++L ++P+ KI YI VG EV+    +S  +  V+PA+QNV+ A++  GLH
Sbjct:    2 IGVCYGMMGNNLPSANEVINLYRSNNIRRMRLYDPNQAALQALRNSGIELILGVPNSDLQGLATNADTARQWVQRNVLNFWPSVKIKYIAVGNEVSPVGGSSWYAQYVLPAVQNVYQAVRAQGLH 126          
BLAST of CF504857 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.958e-23
Identity = 52/128 (40.62%), Postives = 84/128 (65.62%), Query Frame = 1
Query:   19 KGSTIGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGLHK 402
            +GS IGV  G +  D+P P +V  L+K   I+++R+Y+++  +L A ANTG++++I IPN  LL   Q  S A +W+K +++ +YPA  IT ++VG+EV  S  N++ ++V A++NV  AL  A L K
Sbjct:   28 EGSYIGVNIGTDLSDMPHPTQVVALLKAQEIRHIRLYNADPGLLIALANTGIKVIISIPNDQLLGIGQSNSTAANWVKRNVIAHYPATMITAVSVGSEVLTSLSNAAPVLVSAIKNVHAALLSANLDK 155          
BLAST of CF504857 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.272e-22
Identity = 51/131 (38.93%), Postives = 83/131 (63.36%), Query Frame = 1
Query:   13 LCKGSTIGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGLHKR 405
            L + S IGV  G    ++P+P +V  L+K  NI  +R+YD++  +L AFA+TGV+++I +PN  LL  +Q  + A +W+  ++  YYPA  IT I VG+EV  S  N++S++V A++ +  AL  A L ++
Sbjct:   17 LSQDSLIGVNIGTEVTNMPSPTQVVALLKSQNINRVRLYDADRSMLLAFAHTGVQVIISVPNDQLLGISQSNATAANWVTRNVAAYYPATNITTIAVGSEVLTSLTNAASVLVSALKYIQAALVTANLDRQ 147          
BLAST of CF504857 vs. ExPASy Swiss-Prot
Match: E13H_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.243e-21
Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 1
Query:   22 GSTIGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDNSS--SLVVPAMQNVFTALKKAGL 396
            G+  GVCYGR  + LP+P  V  L  ++NI+ +RIYD +   L+A   + +ELM+G+PN DL   A  Q+NAD+W++N++   Y   K  YI VG EV+   +NS    +++ AM+N+ TA+  AGL
Sbjct:   23 GAQAGVCYGRQGNGLPSPADVVSLCNRNNIRRMRIYDPDQPTLEALRGSNIELMLGVPNPDLENVAASQANADTWVQNNV-RNYGNVKFRYIAVGNEVSPLNENSKYVPVLLNAMRNIQTAISGAGL 148          
BLAST of CF504857 vs. ExPASy Swiss-Prot
Match: E1311_ARATH (Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.616e-21
Identity = 53/125 (42.40%), Postives = 83/125 (66.40%), Query Frame = 1
Query:   25 STIGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDNS-SSLVVPAMQNVFTALKKAGL 396
            ++IGV YG+  D+LP+P  V  L+K      +++YD+N Q+LKAF+NTG+E +IG+ N + L   +  S A +W+K ++ P+ PA  IT IT+G E+    D+S ++ ++PAMQ V +AL  AGL
Sbjct:   27 TSIGVNYGQIGDNLPSPTDVIPLIKSIGATKVKLYDANPQILKAFSNTGIEFIIGLGN-EYLSKMKDPSKALTWIKQNVTPFLPATNITCITIGNEILALNDSSLTTNLLPAMQGVHSALITAGL 150          
BLAST of CF504857 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.056e-21
Identity = 51/123 (41.46%), Postives = 80/123 (65.04%), Query Frame = 1
Query:   31 IGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTD-NSSSLVVPAMQNVFTALKKAGL 396
            IGV YG+ AD+LP P +  +L++  +I+ +R+Y ++  ++KA A TGV ++IG  N D+   A   + A  W+ +++LP+YPA+KI  ITVG E+  S D N  + ++PAMQNV  AL+   L
Sbjct:   26 IGVNYGQVADNLPPPSETVKLLQSTSIQKVRLYGADPAIIKALAGTGVGIVIGAANGDVPSLASDPNAATQWINSNVLPFYPASKIMLITVGNEILMSNDPNLVNQLLPAMQNVQKALEAVSL 148          
The following BLAST results are available for this feature:
BLAST of CF504857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
E1313_ARATH2.839e-5070.37Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]
E1312_ARATH9.132e-4965.19Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
E13B_PEA9.196e-2544.00Glucan endo-1,3-beta-glucosidase OS=Pisum sativum ... [more]
GUB_NICPL7.785e-2441.43Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2... [more]
E13B_PHAVU7.785e-2441.60Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E132_ARATH2.958e-2340.63Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E133_ARATH4.272e-2238.93Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E13H_TOBAC1.243e-2141.73Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
E1311_ARATH3.616e-2142.40Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis... [more]
E137_ARATH8.056e-2141.46Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-348 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-22_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504857 ID=CF504857; Name=CF504857; organism=Citrus sinensis; type=EST; length=406bp
GCGCTTCTGGGTTTGTGCAAAGGAAGTACTATTGGTGTCTGCTATGGAAG
AAATGCTGATGACCTCCCAACGCCGGATAAAGTTGCACAGTTGGTTAAAC
AACATAACATCAAATATCTGAGGATCTATGATTCTAACATCCAGGTCCTC
AAGGCATTTGCAAATACTGGAGTTGAACTCATGATCGGAATTCCAAATTC
AGATTTGTTGCCATTTGCACAGTTCCAATCCAATGCAGATAGCTGGCTGA
AAAACAGCATCCTTCCTTACTACCCAGCTGCAAAAATCACATATATAACT
GTTGGTGCTGAAGTCACCGAAAGCACTGATAATTCCTCTTCACTAGTTGT
ACCCGCAATGCAAAATGTCTTTACGGCATTAAAGAAAGCTGGCCTGCATA
AAAGGA
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