CF504891

Overview
NameCF504891
Unique NameCF504891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length306
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504891 vs. ExPASy Swiss-Prot
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.723e-15
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 3
Query:  162 SYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQ 302
            SYDT EKAARAFDAAL+CLRG +AKFNFPDNPP ISGGR+L  SEI+
Sbjct:   40 SYDTPEKAARAFDAALYCLRGNNAKFNFPDNPPVISGGRNLSRSEIR 86          

HSP 2 Score: 66.2402 bits (160), Expect = 5.736e-11
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 2
Query:   71 SRYKGVRKRKWGKYVSEIRLPNSRARIWLGLLRHSRKSSACFRRCFVLLTWPISQV*FPGQP 256
            S+YKGVRKRKWGK+VSEIRLPNSR RIWLG      K++  F      L    ++  FP  P
Sbjct:   10 SKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFPDNP 71          
BLAST of CF504891 vs. ExPASy Swiss-Prot
Match: ERF16_ARATH (Ethylene-responsive transcription factor ERF016 OS=Arabidopsis thaliana GN=ERF016 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.250e-15
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 3
Query:  162 SYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQ 302
            S+D+AEKAARAFDAAL+CLRG  A+FNFPDNPP+I GGRSL P +IQ
Sbjct:   35 SFDSAEKAARAFDAALYCLRGPGARFNFPDNPPEIPGGRSLTPQQIQ 81          

HSP 2 Score: 66.2402 bits (160), Expect = 5.736e-11
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 2
Query:   62 EVTSRYKGVRKRKWGKYVSEIRLPNSRARIWLGLLRHSRKSSACFRRCFVLLTWPISQV*FPGQP 256
            + + +Y GVRKRKWGK+V+EIRLPNSR RIWLG    + K++  F      L  P ++  FP  P
Sbjct:    2 DASPKYTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKAARAFDAALYCLRGPGARFNFPDNP 66          
BLAST of CF504891 vs. ExPASy Swiss-Prot
Match: ERF23_ARATH (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 1.966e-13
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 2
Query:   77 YKGVRKRKWGKYVSEIRLPNSRARIWLG 160
            Y GVRKR+WGK+VSEIR P  ++RIWLG
Sbjct:   45 YHGVRKRRWGKWVSEIREPRKKSRIWLG 72          

HSP 2 Score: 45.8246 bits (107), Expect = 1.966e-13
Identity = 20/47 (42.55%), Postives = 29/47 (61.70%), Query Frame = 3
Query:  162 SYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQ 302
            S+   E AA+A+D A FCL+GR A+ NFP+   D+    +  P +IQ
Sbjct:   73 SFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEIEDLPRPSTCTPRDIQ 119          
BLAST of CF504891 vs. ExPASy Swiss-Prot
Match: ERF14_ARATH (Ethylene-responsive transcription factor ERF014 OS=Arabidopsis thaliana GN=ERF014 PE=2 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 4.293e-13
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 2
Query:   35 STQSKSLLKEVTSRYKGVRKRKWGKYVSEIRLPNSRARIWLG 160
            ST S S+  +   +YKGVR R WG +VSEIR PN + RIWLG
Sbjct:   24 STSSSSIRMK---KYKGVRMRSWGSWVSEIRAPNQKTRIWLG 62          

HSP 2 Score: 42.743 bits (99), Expect = 4.293e-13
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = 3
Query:  162 SYDTAEKAARAFDAALFCLRGRSA-KFNFPD 251
            SY TAE AARA+DAAL CL+G SA   NFP+
Sbjct:   63 SYSTAEAAARAYDAALLCLKGSSANNLNFPE 93          
BLAST of CF504891 vs. ExPASy Swiss-Prot
Match: ERF18_ARATH (Ethylene-responsive transcription factor ERF018 OS=Arabidopsis thaliana GN=ERF018 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.004e-13
Identity = 35/47 (74.47%), Postives = 37/47 (78.72%), Query Frame = 3
Query:  162 SYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQ 302
            SYDT EKAARAFDAA FCLRG  A FNFP+NPP IS  +SL P EIQ
Sbjct:   49 SYDTPEKAARAFDAAQFCLRGGDANFNFPNNPPSISVEKSLTPPEIQ 95          
BLAST of CF504891 vs. ExPASy Swiss-Prot
Match: ERF21_ARATH (Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.597e-12
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 2
Query:   59 KEVTSRYKGVRKRKWGKYVSEIRLPNSRARIWLG 160
            K V S Y+GVRKRKWGK+VSEIR P ++ RIWLG
Sbjct:   18 KGVPSAYRGVRKRKWGKWVSEIREPGTKNRIWLG 51          

HSP 2 Score: 37.7354 bits (86), Expect = 1.597e-12
Identity = 16/30 (53.33%), Postives = 21/30 (70.00%), Query Frame = 3
Query:  162 SYDTAEKAARAFDAALFCLRGRSAKFNFPD 251
            S++T E AA A+D A F  RGR A+ NFP+
Sbjct:   52 SFETPEMAATAYDVAAFHFRGREARLNFPE 81          
BLAST of CF504891 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 47.3654 bits (111), Expect = 6.136e-11
Identity = 19/34 (55.88%), Postives = 26/34 (76.47%), Query Frame = 2
Query:   59 KEVTSRYKGVRKRKWGKYVSEIRLPNSRARIWLG 160
            +E   RY+GVR+R WGK+ +EIR P+  AR+WLG
Sbjct:   71 REKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLG 104          

HSP 2 Score: 39.2762 bits (90), Expect = 6.136e-11
Identity = 17/31 (54.84%), Postives = 22/31 (70.97%), Query Frame = 3
Query:  162 SYDTAEKAARAFDAALFCLRGRSAKFNFPDN 254
            ++DTAE AARA+D A    RG  AK NFP++
Sbjct:  105 TFDTAEAAARAYDEAALRFRGNKAKLNFPED 135          
BLAST of CF504891 vs. ExPASy Swiss-Prot
Match: TINY_ARATH (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 7.965e-11
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 2
Query:   77 YKGVRKRKWGKYVSEIRLPNSRARIWLG 160
            Y+GVRKR WGK+VSEIR P  ++RIWLG
Sbjct:   36 YRGVRKRNWGKWVSEIREPRKKSRIWLG 63          

HSP 2 Score: 36.5798 bits (83), Expect = 7.965e-11
Identity = 19/47 (40.43%), Postives = 25/47 (53.19%), Query Frame = 3
Query:  162 SYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQ 302
            ++ + E AARA D A   ++G SA  NFPD         SL P +IQ
Sbjct:   64 TFPSPEMAARAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQ 110          
The following BLAST results are available for this feature:
BLAST of CF504891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ERF17_ARATH1.723e-1580.85Ethylene-responsive transcription factor ERF017 OS... [more]
ERF16_ARATH2.250e-1576.60Ethylene-responsive transcription factor ERF016 OS... [more]
ERF23_ARATH1.966e-1371.43Ethylene-responsive transcription factor ERF023 OS... [more]
ERF14_ARATH4.293e-1357.14Ethylene-responsive transcription factor ERF014 OS... [more]
ERF18_ARATH8.004e-1374.47Ethylene-responsive transcription factor ERF018 OS... [more]
ERF21_ARATH1.597e-1270.59Ethylene-responsive transcription factor ERF021 OS... [more]
EF110_ARATH6.136e-1155.88Ethylene-responsive transcription factor ERF110 OS... [more]
TINY_ARATH7.965e-1171.43Ethylene-responsive transcription factor TINY OS=A... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-383 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-22_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504891 ID=CF504891; Name=CF504891; organism=Citrus sinensis; type=EST; length=306bp
ATACCCATAACCTGAAGCCCTTTAAAAATGGTGAAGCACGCAGTCGAAAA
GCCTGCTGAAGGAAGTGACCTCTCGTTACAAGGGTGTCCGAAAGCGAAAG
TGGGGGAAATATGTGTCTGAAATCAGACTACCCAACAGCCGTGCCCGTAT
CTGGCTGGGCCTCCTACGACACAGCAGAAAAAGCAGCGCGTGCTTTCGAC
GCTGCTTTGTTTTGCTTACGTGGCCGATCAGCCAAGTTTAATTTCCCGGA
CAACCCACCCGACATATCAGGCGGGCGCTCACTTAAGCCATCTGAGATTC
AAGCTG
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