CF504900

Overview
NameCF504900
Unique NameCF504900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504900 vs. ExPASy Swiss-Prot
Match: WDR26_DROME (WD repeat-containing protein 26 homolog OS=Drosophila melanogaster GN=CG7611 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.036e-15
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 3
Query:  114 PC--MFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVD 314
            PC  M   ++   +SL TDH C  D  P +T+QIL  H DEVWF +FS +G  LA+ S D + IIW+VD
Sbjct:  276 PCHDMAWETNLETVSLLTDHCCTTDGFPMQTIQILTDHCDEVWFCKFSPDGLKLATGSKDSTVIIWDVD 344          

HSP 2 Score: 33.113 bits (74), Expect = 8.036e-15
Identity = 14/31 (45.16%), Postives = 22/31 (70.97%), Query Frame = 2
Query:   20 EELQKLLPPTIMIPERRLEHLVEQALVLQRE 112
            E LQ  +PP++M+  RRL  L++QA+ LQ +
Sbjct:  243 ERLQTFMPPSVMMSPRRLRTLLQQAVELQSQ 273          
BLAST of CF504900 vs. ExPASy Swiss-Prot
Match: YIPC_SCHPO (Uncharacterized WD repeat-containing protein C343.04c OS=Schizosaccharomyces pombe GN=SPAC343.04c PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 8.958e-13
Identity = 24/64 (37.50%), Postives = 45/64 (70.31%), Query Frame = 3
Query:  120 MFHNSSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEV 311
            ++HN   ++ S  +D++    ++P++   +   H+DEVW + +SHNG+YLAS+S D++AII++V
Sbjct:  180 VYHNVL-KNFSFLSDYKADPSELPTKEYHVFHDHSDEVWQISYSHNGRYLASASKDKTAIIFDV 242          

HSP 2 Score: 32.3426 bits (72), Expect = 8.958e-13
Identity = 12/24 (50.00%), Postives = 20/24 (83.33%), Query Frame = 2
Query:   23 ELQKLLPPTIMIPERRLEHLVEQA 94
            +L + + P I++P+RRLEHL++QA
Sbjct:  148 QLSEYISPEILLPKRRLEHLLQQA 171          
BLAST of CF504900 vs. ExPASy Swiss-Prot
Match: WDR26_DANRE (WD repeat-containing protein 26 OS=Danio rerio GN=wdr26 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.483e-11
Identity = 34/81 (41.98%), Postives = 47/81 (58.02%), Query Frame = 3
Query:   84 LNRPLSCNEKPCMFHN----SSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVD 314
            L + +      C++HN    SS   +SL  DH C R Q P  T QIL  H +EVWF +FS++G  LA+ S D + IIW+V+
Sbjct:  217 LRQAVELQRDRCLYHNTKLDSSLDSVSLLLDHVCSRKQFPCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVIIWQVE 297          
BLAST of CF504900 vs. ExPASy Swiss-Prot
Match: WDR26_MOUSE (WD repeat-containing protein 26 OS=Mus musculus GN=Wdr26 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.936e-11
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 3
Query:   84 LNRPLSCNEKPCMFHNSS-DRDM---SLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVD 314
            L + +      C++HN+  D ++   SL  DH C R Q P  T QIL  H +EVWF +FS++G  LA+ S D + IIW+VD
Sbjct:  285 LRQAVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSRRQFPCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVIIWQVD 365          
BLAST of CF504900 vs. ExPASy Swiss-Prot
Match: WDR26_HUMAN (WD repeat-containing protein 26 OS=Homo sapiens GN=WDR26 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 1.936e-11
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 3
Query:   84 LNRPLSCNEKPCMFHNSS-DRDM---SLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVD 314
            L + +      C++HN+  D ++   SL  DH C R Q P  T QIL  H +EVWF +FS++G  LA+ S D + IIW+VD
Sbjct:  305 LRQAVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSRRQFPCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVIIWQVD 385          
BLAST of CF504900 vs. ExPASy Swiss-Prot
Match: WDR26_XENTR (WD repeat-containing protein 26 OS=Xenopus tropicalis GN=wdr26 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.529e-11
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 3
Query:   84 LNRPLSCNEKPCMFHNSS-DRDM---SLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVD 314
            L + +      C++HN+  D ++   SL  DH C R Q P  T Q+L  H +EVWF +FS++G  LA+ S D + IIW+VD
Sbjct:  258 LRQAVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSRKQFPCFTQQVLTEHCNEVWFCKFSNDGTKLATGSKDTTVIIWQVD 338          
The following BLAST results are available for this feature:
BLAST of CF504900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
WDR26_DROME8.036e-1547.83WD repeat-containing protein 26 homolog OS=Drosoph... [more]
YIPC_SCHPO8.958e-1337.50Uncharacterized WD repeat-containing protein C343.... [more]
WDR26_DANRE1.483e-1141.98WD repeat-containing protein 26 OS=Danio rerio GN=... [more]
WDR26_MOUSE1.936e-1141.98WD repeat-containing protein 26 OS=Mus musculus GN... [more]
WDR26_HUMAN1.936e-1141.98WD repeat-containing protein 26 OS=Homo sapiens GN... [more]
WDR26_XENTR2.529e-1140.74WD repeat-containing protein 26 OS=Xenopus tropica... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-392 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-23_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504900 ID=CF504900; Name=CF504900; organism=Citrus sinensis; type=EST; length=321bp
CCTCGTGCCGAATCGGCACGAGGAATTGCAGAAACTGCTTCCCCCAACGA
TTATGATACCTGAAAGAAGGTTGGAACATTTAGTTGAACAGGCCCTTGTC
TTGCAACGAGAAGCCTTGCATGTTTCACAATTCCTCGGACAGGGATATGT
CATTGTACACTGATCATCAGTGTGGAAGAGATCAAATTCCTTCTCGAACA
TTGCAGATATTACAAGGTCACACTGATGAAGTTTGGTTCTTGCAATTTTC
ACACAATGGGAAATATTTAGCTTCATCATCCAACGACCGATCAGCAATCA
TTTGGGAGGTTGATCTTAATG
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