CF504944

Overview
NameCF504944
Unique NameCF504944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length356
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504944_ssr5 microsatellite CF504944_ssr5:5..19. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11660 contig Csv1_Contig11660:11..366. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504944 vs. ExPASy Swiss-Prot
Match: ERH_ARATH (Enhancer of rudimentary homolog OS=Arabidopsis thaliana GN=At5g10810 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.333e-42
Identity = 77/93 (82.80%), Postives = 88/93 (94.62%), Query Frame = 2
Query:   74 ANRHTIILMQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTF 352
            ++RHTIIL+Q SPSRATRTFMDY SI QAMDGICGLYERKLKE+NP++R+I+YD+ADLYNFIDGLAD+SALVYDHSI AYLPYDRQWIKQ+ F
Sbjct:    6 SSRHTIILLQNSPSRATRTFMDYDSIGQAMDGICGLYERKLKEINPSLRNISYDIADLYNFIDGLADLSALVYDHSISAYLPYDRQWIKQKAF 98          
BLAST of CF504944 vs. ExPASy Swiss-Prot
Match: ERH_DICDI (Enhancer of rudimentary homolog OS=Dictyostelium discoideum GN=erh PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.673e-24
Identity = 46/88 (52.27%), Postives = 70/88 (79.55%), Query Frame = 2
Query:   83 HTIILMQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQR 346
            HTI+L+QT+  +++RTFMDY S++QA++GIC +YE++LK+  P  ++ITYD++ L+ FID LAD+S LVY   I AY PY+++WIK +
Sbjct:    3 HTIVLLQTTMGKSSRTFMDYESVNQAIEGICNMYEQRLKQERPNQKNITYDISQLFKFIDSLADLSCLVYTSHINAYTPYNKEWIKTK 90          
BLAST of CF504944 vs. ExPASy Swiss-Prot
Match: ERH_AEDAE (Enhancer of rudimentary homolog OS=Aedes aegypti PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.718e-21
Identity = 41/90 (45.56%), Postives = 63/90 (70.00%), Query Frame = 2
Query:   83 HTIILMQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTF 352
            HTI+L+Q   +  TRT+ DY S+++ M+G+C +YE  LK  NP    ITYD++ L++F+D LAD+S LVY  S   Y PY+++WIK++ +
Sbjct:    3 HTILLVQPGRNPETRTYSDYESVNECMEGVCKIYEEHLKRRNPNTPTITYDISQLFDFVDQLADLSCLVYQKSTNTYAPYNKEWIKEKIY 92          
BLAST of CF504944 vs. ExPASy Swiss-Prot
Match: ERH_MOUSE (Enhancer of rudimentary homolog OS=Mus musculus GN=Erh PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.342e-20
Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = 2
Query:   83 HTIILMQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTF 352
            HTI+L+Q +     RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++FID LAD+S LVY    Q Y PY++ WIK++ +
Sbjct:    3 HTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIY 92          
BLAST of CF504944 vs. ExPASy Swiss-Prot
Match: ERH_HUMAN (Enhancer of rudimentary homolog OS=Homo sapiens GN=ERH PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.342e-20
Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = 2
Query:   83 HTIILMQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTF 352
            HTI+L+Q +     RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++FID LAD+S LVY    Q Y PY++ WIK++ +
Sbjct:    3 HTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIY 92          
BLAST of CF504944 vs. ExPASy Swiss-Prot
Match: ERH_BOVIN (Enhancer of rudimentary homolog OS=Bos taurus GN=ERH PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.342e-20
Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = 2
Query:   83 HTIILMQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTF 352
            HTI+L+Q +     RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++FID LAD+S LVY    Q Y PY++ WIK++ +
Sbjct:    3 HTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIY 92          
BLAST of CF504944 vs. ExPASy Swiss-Prot
Match: ERH_DANRE (Enhancer of rudimentary homolog OS=Danio rerio GN=erh PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.058e-20
Identity = 40/90 (44.44%), Postives = 62/90 (68.89%), Query Frame = 2
Query:   83 HTIILMQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTF 352
            HTI+L+Q +     RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++F+D LAD+S LVY    Q Y PY++ WIK++ +
Sbjct:    3 HTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFVDDLADLSCLVYRADTQTYQPYNKDWIKEKIY 92          
BLAST of CF504944 vs. ExPASy Swiss-Prot
Match: ER_DROVI (Protein enhancer of rudimentary OS=Drosophila virilis GN=e(r) PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.994e-20
Identity = 41/90 (45.56%), Postives = 60/90 (66.67%), Query Frame = 2
Query:   83 HTIILMQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTF 352
            HTI+L+Q      TRT+ DY S+++ M+G+C +YE  LK  NP    ITYD++ L++FID L D+S LVY  S   Y PY++ WIK++ +
Sbjct:    3 HTILLVQPGARPETRTYCDYESVNECMEGVCKIYEEHLKRRNPNTPTITYDISQLFDFIDTLIDISCLVYQKSTNTYAPYNKDWIKEKIY 92          
BLAST of CF504944 vs. ExPASy Swiss-Prot
Match: ER_DROME (Protein enhancer of rudimentary OS=Drosophila melanogaster GN=e(r) PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.898e-20
Identity = 39/90 (43.33%), Postives = 60/90 (66.67%), Query Frame = 2
Query:   83 HTIILMQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTF 352
            HTI+L+Q      TRT+ DY S+++ M+G+C +YE  LK  NP    ITYD++ L++FID + D+S +VY  S   Y PY++ WIK++ +
Sbjct:    3 HTILLVQPGARPETRTYCDYESVNECMEGVCKIYEEHLKRRNPNTPTITYDISQLFDFIDTMVDISCMVYQKSTNTYAPYNKDWIKEKIY 92          
BLAST of CF504944 vs. ExPASy Swiss-Prot
Match: ERH_CAEEL (Enhancer of rudimentary homolog OS=Caenorhabditis elegans GN=T21C9.4 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.051e-16
Identity = 35/91 (38.46%), Postives = 65/91 (71.43%), Query Frame = 2
Query:   83 HTIILMQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQ 355
            HTI+L+Q + +  +R++ DY + ++ ++GIC +YE  LK+  PA  +ITYD++ L+ FID L D+S LV D++   Y+P+++Q++K+  ++
Sbjct:    3 HTILLLQPTDNIESRSWSDYENTTECLEGICRVYEEYLKKKVPAQNEITYDISHLFEFIDDLKDLSMLVLDNTTYTYVPHNKQYVKESIYK 93          
The following BLAST results are available for this feature:
BLAST of CF504944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ERH_ARATH6.333e-4282.80Enhancer of rudimentary homolog OS=Arabidopsis tha... [more]
ERH_DICDI2.673e-2452.27Enhancer of rudimentary homolog OS=Dictyostelium d... [more]
ERH_AEDAE4.718e-2145.56Enhancer of rudimentary homolog OS=Aedes aegypti P... [more]
ERH_MOUSE2.342e-2045.56Enhancer of rudimentary homolog OS=Mus musculus GN... [more]
ERH_HUMAN2.342e-2045.56Enhancer of rudimentary homolog OS=Homo sapiens GN... [more]
ERH_BOVIN2.342e-2045.56Enhancer of rudimentary homolog OS=Bos taurus GN=E... [more]
ERH_DANRE3.058e-2044.44Enhancer of rudimentary homolog OS=Danio rerio GN=... [more]
ER_DROVI3.994e-2045.56Protein enhancer of rudimentary OS=Drosophila viri... [more]
ER_DROME8.898e-2043.33Protein enhancer of rudimentary OS=Drosophila mela... [more]
ERH_CAEEL2.051e-1638.46Enhancer of rudimentary homolog OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-437 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-23_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504944 ID=CF504944; Name=CF504944; organism=Citrus sinensis; type=EST; length=356bp
CAAAAAAATAAAATAAAATAAAAAAAAATCGCGCTCGCCCTTGCTCTTGA
CGCTATCATCGCTATCTTCAATGGCTAATAGGCACACCATTATTCTGATG
CAGACTTCTCCAAGCAGAGCAACAAGAACCTTCATGGATTATGGTTCAAT
AAGCCAAGCTATGGATGGTATATGTGGACTTTATGAAAGGAAGCTTAAGG
AGTTAAATCCAGCAATCAGAGACATCACTTATGATGTTGCAGATCTCTAC
AACTTCATTGATGGTCTTGCAGACATGAGTGCATTAGTATACGATCACTC
AATTCAGGCTTATTTGCCGTATGACAGACAGTGGATCAAACAAAGGACAT
TTCAAC
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