CF504948

Overview
NameCF504948
Unique NameCF504948
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1212 contig Csv1_Contig1212:42..374. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504948 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.149e-17
Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = 2 
Query:  101 AAGIADTRFIRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYEAI 331
            A+     +FI++SC  TTYPA+C QSLSAYA +IQ +P++LA TAL VSL+R Q A++F+ +L KF+ LK R+Y AI
Sbjct:   20 ASAAPANQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAI 96
The following BLAST results are available for this feature:
BLAST of CF504948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
21KD_DAUCA3.149e-1754.5521 kDa protein OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-441 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-23_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504948 ID=CF504948; Name=CF504948; organism=Citrus sinensis; type=EST; length=333bp
CAAGCAAGCAGAAAGCTTTTAATTAGTTTCTGAAAACATGGCAAAAACAG
GCTGTCTTTTGCTATTGCTCTCTCTCCTCTACATTATAAGCTTGGTCACA
GCTGCCGGGATTGCTGACACAAGATTTATCAGAAGTTCTTGCAAATCCAC
AACTTATCCAGCGCTGTGCGTGCAGTCTCTCTCAGCTTATGCCCCATCAA
TTCAACAAAGCCCCCGGCAACTGGCTGTCACAGCCTTGTCCGTGAGCCTC
TCCAGGGCCCAATCCGCAAAGTCATTCGTGACCAAGCTGAGGAAGTTCAG
GAACCTGAAGCACAGAGAGTATGAGGCGATTGC
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