CF504957

Overview
NameCF504957
Unique NameCF504957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:344..602. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504957 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.695e-23
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 3
Query:   15 RKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGV 257
            RKREIAAF  QT HETTGGW  AP G YAWGYC++R+ +P++              QYYGRGPIQ++WN NY +CG A+GV
Sbjct:  127 RKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGV 207          
BLAST of CF504957 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.695e-23
Identity = 47/83 (56.63%), Postives = 59/83 (71.08%), Query Frame = 3
Query:   12 MRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGV 257
            +RKRE+AAF  QT HETTGGW  AP G YAWGYC++++ +P+S+           PG+ YYGRGP+QL+WN NY  CGEAL V
Sbjct:   52 VRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALRV 134          
BLAST of CF504957 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.695e-23
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 3
Query:   15 RKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGV 257
            RKREIAAF  QT HETTGGW  AP G YAWGYC++R+ +P++              QYYGRGPIQ++WN NY +CG A+GV
Sbjct:  126 RKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGV 206          
BLAST of CF504957 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.695e-23
Identity = 49/83 (59.04%), Postives = 56/83 (67.47%), Query Frame = 3
Query:    9 TMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALG 254
            T RKRE+AAFFAQT HETTGGW  AP G YAWGYCY+R+     S           PGQ YYGRGPIQ+++N NY  CG A+G
Sbjct:  134 TRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAIG 216          
BLAST of CF504957 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.937e-22
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 3
Query:   15 RKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGV 257
            +KREIAAF  QT HETTGGW  AP G YAWGYC++R+ +P++              QYYGRGPIQ++WN NY +CG A+GV
Sbjct:  119 KKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGV 199          
BLAST of CF504957 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.636e-22
Identity = 51/88 (57.95%), Postives = 61/88 (69.32%), Query Frame = 3
Query:    3 NETMRKREIAAFFAQTGHETTGG--WTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGV 257
            ++  RKREIAAF AQT HETTGG  W  AP G YAWGYCY R+++P SS           PG QY+GRGP+QL+WN NY +CG A+GV
Sbjct:   99 DQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGV 185          
BLAST of CF504957 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.636e-22
Identity = 51/88 (57.95%), Postives = 61/88 (69.32%), Query Frame = 3
Query:    3 NETMRKREIAAFFAQTGHETTGG--WTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGV 257
            ++  RKREIAAF AQT HETTGG  W  AP G YAWGYCY R+++P SS           PG QY+GRGP+QL+WN NY +CG A+GV
Sbjct:  121 DQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGV 207          
BLAST of CF504957 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 1.640e-21
Identity = 45/82 (54.88%), Postives = 56/82 (68.29%), Query Frame = 3
Query:   15 RKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGV 257
            RK+E+AAFF QT HETTGGW  AP G Y+WGYC+ ++ +PAS             G +YYGRGP+QL+WN NY  CG A+GV
Sbjct:  137 RKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGV 218          
BLAST of CF504957 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.142e-21
Identity = 47/84 (55.95%), Postives = 55/84 (65.48%), Query Frame = 3
Query:    9 TMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGV 257
            T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R+                 PG +Y+GRGPIQ++ N NY  CG A+GV
Sbjct:  116 TARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGV 199          
BLAST of CF504957 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.797e-21
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = 3
Query:   15 RKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALG 254
            RK+EIAAFF QT HETTGGW  AP G Y+WGYC+ ++ +P+S+            G+ YYGRGP+QL+WN NY +CG A+G
Sbjct:  122 RKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAIG 202          
The following BLAST results are available for this feature:
BLAST of CF504957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CHIT_PHAVU8.695e-2356.79Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIT_CARPA8.695e-2356.63Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI5_PHAVU8.695e-2356.79Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI3_TOBAC8.695e-2359.04Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI2_PEA1.937e-2255.56Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI2_GOSHI5.636e-2257.95Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI5.636e-2257.95Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHIB_ARATH1.640e-2154.88Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI2_SOLTU2.142e-2155.95Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_BRANA2.797e-2154.32Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-450 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-23_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504957 ID=CF504957; Name=CF504957; organism=Citrus sinensis; type=EST; length=259bp
GAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACT
GGCCATGAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATATGC
TTGGGGATATTGCTATATTAGGCAAGTTAGCCCTGCGTCGTCCGACTACT
GTTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGAGGT
CCAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTT
GGGGGTGGA
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