CF504958

Overview
NameCF504958
Unique NameCF504958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length373
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:46..417. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.061e-25
Identity = 54/86 (62.79%), Postives = 62/86 (72.09%), Query Frame = 2
Query:  116 CAGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            C G  D G   D G L  II +  F+ LL +RNDARCPA GFYTY+AFI AA+ FP FGN+G++ MRKREIAAF  QT HETTGGW
Sbjct:   74 CDGGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGW 159          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.385e-25
Identity = 49/73 (67.12%), Postives = 61/73 (83.56%), Query Frame = 2
Query:  155 GELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            G++G++I+R MF D+L +RN+  CP +GFYTYDAFI AA+AFPGFG +G+ T RKREIAAF AQT HETTGGW
Sbjct:   63 GDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGW 135          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.031e-25
Identity = 50/73 (68.49%), Postives = 59/73 (80.82%), Query Frame = 2
Query:  155 GELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            G+L  IISR  F+D+L +RND  CPARGFYTYDAFI AA++FPGFG +G+   RK+EIAAFF QT HETTGGW
Sbjct:   69 GDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGW 141          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.876e-25
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 2
Query:  152 GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FPGFG SG+ T RKREIAAFFAQT HETTGGW
Sbjct:   72 GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGW 145          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 6.876e-25
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 2
Query:  152 GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FPGFG SG+ T RKREIAAFFAQT HETTGGW
Sbjct:   77 GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGW 150          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 2.613e-24
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 2
Query:  155 GELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            G+L  IIS   F+D+L +RNDA CPARGFYTY+AFI AA++FPGFG +G+   RK+E+AAFF QT HETTGGW
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGW 156          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.297e-23
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 2
Query:  137 GHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            G G  GG +  ++S+E+FE LL +RNDA CPARGFYTYDA + AA AFP F  +G++  RKRE+AAF  QT HETTGGW
Sbjct:   78 GGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGW 156          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.773e-23
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 2
Query:  143 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGG 370
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HET GG
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG 96          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.928e-23
Identity = 46/76 (60.53%), Postives = 61/76 (80.26%), Query Frame = 2
Query:  143 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGG 370
            G+   ++G I++ ++F ++L  RND RCPA+GFYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HETTGG
Sbjct:   13 GSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGG 88          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 4.928e-23
Identity = 49/79 (62.03%), Postives = 57/79 (72.15%), Query Frame = 2
Query:  137 GHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            G G   G L  II   MF+D+L YRND +CPA GFYTY+AFI AA+ FP FGN+G++ MRKREIAAF  QT HET G W
Sbjct:   77 GGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWW 155          
The following BLAST results are available for this feature:
BLAST of CF504958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHI6_POPTR1.061e-2562.79Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIB_VITVI1.385e-2567.12Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI2_BRANA4.031e-2568.49Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI2_TOBAC6.876e-2567.57Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC6.876e-2567.57Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIB_ARATH2.613e-2465.75Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI9_ORYSJ1.297e-2360.76Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SOLLC3.773e-2361.84Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIB_SOLLC4.928e-2360.53Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIB_POPTR4.928e-2362.03Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-451 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-23_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504958 ID=CF504958; Name=CF504958; organism=Citrus sinensis; type=EST; length=373bp
ATTGATATCATAACTCTTGCTTTCAAAATGAGGCTCATTGGGTCCTTACT
AATTTTCTCTCTAGTTTTATCTTTTGTACTAGGAGGTTCAGCACAGAATT
GTGGAAGCGGCGTTGTGTGCCGGTGAACGTGATACTGGCCACGGGACGGA
TGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGC
TTCCGTATAGAAATGATGCCCGATGCCCTGCCAGAGGCTTCTACACTTAT
GATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGG
AAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTG
GCCATGAAACTACTGGGGGATGG
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