CF504961

Overview
NameCF504961
Unique NameCF504961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length402
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig569 contig Csv1_Contig569:1..402. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF504961 vs. ExPASy Swiss-Prot
Match: TM222_HUMAN (Transmembrane protein 222 OS=Homo sapiens GN=TMEM222 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.616e-16
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 3 
Query:  150 IDPSRARFPCCIVWSPLPVISWLIPFVGHTGICREDGVILDFAGPNFVCVDSFAFGSTTRY 332
            +D  R+RFP C+VW+P+PV++W  P +GH GIC   GVI DFAGP FV  D+ AFG   +Y
Sbjct:   45 MDVERSRFPYCVVWTPIPVLTWFFPIIGHMGICTSTGVIRDFAGPYFVSEDNMAFGKPAKY 105
[Close]
BLAST of CF504961 vs. ExPASy Swiss-Prot
Match: TM222_MOUSE (Transmembrane protein 222 OS=Mus musculus GN=Tmem222 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.939e-16
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 3 
Query:  150 IDPSRARFPCCIVWSPLPVISWLIPFVGHTGICREDGVILDFAGPNFVCVDSFAFGSTTRY 332
            +D  R+RFP C+VW+P+PV++W  P +GH GIC   GVI DFAGP FV  D+ AFG   ++
Sbjct:   45 MDVERSRFPYCVVWTPIPVLTWFFPIIGHMGICTSAGVIRDFAGPYFVSEDNMAFGKPAKF 105
The following BLAST results are available for this feature:
BLAST of CF504961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TM222_HUMAN2.616e-1654.10Transmembrane protein 222 OS=Homo sapiens GN=TMEM2... [more]
TM222_MOUSE9.939e-1652.46Transmembrane protein 222 OS=Mus musculus GN=Tmem2... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-454 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-23_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504961 ID=CF504961; Name=CF504961; organism=Citrus sinensis; type=EST; length=402bp
CCTCGTGCCGCGTAACGCTCCTGTGCTTGGATCGCTCCTTTAATCCCCAA
TAATAGGCAATTCGGCACTGCAGAACCATAGCAATGGAAGGAAATGTGGA
CCCTGAGCATGGTATGATGATGGAAGAAAGTTATCAACCAAATATGCAAA
TTGATCCAAGTAGAGCAAGGTTTCCGTGCTGCATTGTTTGGTCACCTCTT
CCTGTCATATCTTGGCTGATTCCTTTTGTTGGTCACACTGGCATATGCAG
AGAGGATGGAGTAATTTTGGATTTTGCAGGGCCTAATTTCGTGTGTGTCG
ACAGTTTTGCATTTGGGTCAACAACTCGCTACATTCAAGTGAACAAGGAA
AAGTGTTGTATTTCCCCCTATTTATCTGCATTTGATGGGGATGACCACCA
CC
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