CF504967

Overview
NameCF504967
Unique NameCF504967
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length348
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9241 contig Csv1_Contig9241:79..426. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504967 vs. ExPASy Swiss-Prot
Match: BADH1_ARATH (Betaine aldehyde dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=ALDH10A8 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.427e-46
Identity = 85/109 (77.98%), Postives = 100/109 (91.74%), Query Frame = 2
Query:   20 MAIPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLGEAVW 346
            MAIP+P+RQLFI+GEWREP+LKKRIPIVNP TEE++GDIPAAT EDV++AV+AAR+ALSRNKGKDW+ A GA RAKYLRAIAAK+ ERK++LA LE +DCGKPL EAVW
Sbjct:    1 MAIPMPTRQLFIDGEWREPILKKRIPIVNPATEEVIGDIPAATTEDVDVAVNAARRALSRNKGKDWAKAPGAVRAKYLRAIAAKVNERKTDLAKLEALDCGKPLDEAVW 109          
BLAST of CF504967 vs. ExPASy Swiss-Prot
Match: BADH_AMAHP (Betaine aldehyde dehydrogenase, chloroplastic OS=Amaranthus hypochondriacus GN=BADH4 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.284e-43
Identity = 84/107 (78.50%), Postives = 95/107 (88.79%), Query Frame = 2
Query:   20 MAIPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLGEA 340
            MAI +PSRQLFI+GEWREP+ K RIPI+NP+TEEI+GDIPAATAEDVELAV AAR+AL RNKG+DW+SASGA RAKYLRAIAAKITE+K   A LE +DCGKPL EA
Sbjct:    1 MAIRVPSRQLFIDGEWREPIKKNRIPIINPSTEEIIGDIPAATAEDVELAVAAARRALKRNKGEDWASASGAHRAKYLRAIAAKITEKKDYFAKLEAMDCGKPLDEA 107          
BLAST of CF504967 vs. ExPASy Swiss-Prot
Match: BADH2_ARATH (Betaine aldehyde dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=ALDH10A9 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.126e-42
Identity = 80/109 (73.39%), Postives = 94/109 (86.24%), Query Frame = 2
Query:   20 MAIPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLGEAVW 346
            MAI +P RQLFI G+W EPVL+K +P+VNP TE+I+G IPAAT+EDVELAV+AAR+A +RN GKDW+ A+GA RAKYLRAIAAK+ ERKSELANLE IDCGKPL EA W
Sbjct:    1 MAITVPRRQLFIGGQWTEPVLRKTLPVVNPATEDIIGYIPAATSEDVELAVEAARKAFTRNNGKDWARATGAVRAKYLRAIAAKVIERKSELANLEAIDCGKPLDEAAW 109          
BLAST of CF504967 vs. ExPASy Swiss-Prot
Match: BADH_BETVU (Betaine aldehyde dehydrogenase, chloroplastic OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.685e-39
Identity = 74/108 (68.52%), Postives = 92/108 (85.19%), Query Frame = 2
Query:   20 MAIPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLGEAV 343
            M++PIPSRQLFI+GEWREP+ K RIPI+NP+ EEI+GDIPA ++ED+E+AV AAR+AL RNKG++W++ SGA RA+YLRAIAAK+TERK     LETID GKP  EAV
Sbjct:    1 MSMPIPSRQLFIDGEWREPIKKNRIPIINPSNEEIIGDIPAGSSEDIEVAVAAARRALKRNKGREWAATSGAHRARYLRAIAAKVTERKDHFVKLETIDSGKPFDEAV 108          
BLAST of CF504967 vs. ExPASy Swiss-Prot
Match: BADH_ATRHO (Betaine aldehyde dehydrogenase, chloroplastic OS=Atriplex hortensis PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.433e-38
Identity = 78/108 (72.22%), Postives = 91/108 (84.26%), Query Frame = 2
Query:   20 MAIPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLGEAV 343
            MA PIP+RQLFI+GEWREP+LK RIPI+NP+TEEI+GDIPAATAEDVE+AV AAR+A  RNKG+DW +A  + RAKYLRAIAAKITE+K     LET+D GKP  EAV
Sbjct:    1 MAFPIPARQLFIDGEWREPLLKNRIPIINPSTEEIIGDIPAATAEDVEVAVVAARKAFKRNKGRDW-AALWSHRAKYLRAIAAKITEKKDHFVKLETLDSGKPRDEAV 107          
BLAST of CF504967 vs. ExPASy Swiss-Prot
Match: BADH_SPIOL (Betaine aldehyde dehydrogenase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.588e-37
Identity = 76/108 (70.37%), Postives = 88/108 (81.48%), Query Frame = 2
Query:   20 MAIPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLGEAV 343
            MA PIP+RQLFI+GEWREP+ K RIP++NP+TEEI+GDIPAATAEDVE+AV AAR+A  RN   +WS+ SGA RA YLRAIAAKITE+K     LETID GKP  EAV
Sbjct:    1 MAFPIPARQLFIDGEWREPIKKNRIPVINPSTEEIIGDIPAATAEDVEVAVVAARRAFRRN---NWSATSGAHRATYLRAIAAKITEKKDHFVKLETIDSGKPFDEAV 105          
BLAST of CF504967 vs. ExPASy Swiss-Prot
Match: BADH_ORYSJ (Betaine aldehyde dehydrogenase OS=Oryza sativa subsp. japonica GN=Os04g0464200 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.804e-33
Identity = 72/109 (66.06%), Postives = 82/109 (75.23%), Query Frame = 2
Query:   14 MAMAIPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLGEA 340
            MA    IP R LFI G WREP L +R+P+VNP TE  +GDIPAATAEDVELAV AAR A  R+ G+ WS A GA RAKYL+AIAAKI ++KS LA LET+D GKPL EA
Sbjct:    1 MAAPSAIPRRGLFIGGGWREPSLGRRLPVVNPATEATIGDIPAATAEDVELAVSAARDAFGRDGGRHWSRAPGAVRAKYLKAIAAKIKDKKSYLALLETLDSGKPLDEA 109          
BLAST of CF504967 vs. ExPASy Swiss-Prot
Match: BADH_HORVU (Betaine aldehyde dehydrogenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.844e-29
Identity = 67/110 (60.91%), Postives = 79/110 (71.82%), Query Frame = 2
Query:   14 MAMAIPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLGEAV 343
            MA    IP R LFI G WREP L + IP++NP TE+ +GDIPAATAEDVELAV A    L+R + + W+ ASGA RAKYL AIAAKIT + + LA LET+D GKP  EAV
Sbjct:    1 MAAPPAIPRRGLFIGGGWREPTLGRHIPVINPATEDTIGDIPAATAEDVELAVAAGGPVLARRR-EPWARASGATRAKYLNAIAAKITGKIAYLALLETVDSGKPKDEAV 109          
BLAST of CF504967 vs. ExPASy Swiss-Prot
Match: AL1B1_PONAB (Aldehyde dehydrogenase X, mitochondrial OS=Pongo abelii GN=ALDH1B1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.299e-15
Identity = 43/103 (41.75%), Postives = 58/103 (56.31%), Query Frame = 2
Query:   32 IPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLGEA 340
            IP  QLFIN EW++ V KK  P VNPTT E++G +      DV+ AV AAR+A     G  W     + R + L  +A  +   +  LA+LET+D GKP  E+
Sbjct:   34 IPYNQLFINNEWQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDRAVKAAREAF--RLGSPWRRMDASERGRLLNCLADLVERDRVYLASLETLDNGKPFQES 134          
BLAST of CF504967 vs. ExPASy Swiss-Prot
Match: AL1B1_RAT (Aldehyde dehydrogenase X, mitochondrial OS=Rattus norvegicus GN=Aldh1b1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.697e-15
Identity = 46/113 (40.71%), Postives = 62/113 (54.87%), Query Frame = 2
Query:   17 AMAIPIPS-----RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLGEA 340
            A+  PIP+      QLFIN EW + V KK  P VNPTT E++G +      DV+LAV AAR+A     G  W     + R + L  +A  +   +  LA+LET+D GKP  E+
Sbjct:   26 ALPNPIPNPEIRYNQLFINNEWHDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDLAVRAAREAF--RLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQES 136          
The following BLAST results are available for this feature:
BLAST of CF504967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
BADH1_ARATH2.427e-4677.98Betaine aldehyde dehydrogenase 1, chloroplastic OS... [more]
BADH_AMAHP4.284e-4378.50Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
BADH2_ARATH2.126e-4273.39Betaine aldehyde dehydrogenase 2, mitochondrial OS... [more]
BADH_BETVU1.685e-3968.52Betaine aldehyde dehydrogenase, chloroplastic OS=B... [more]
BADH_ATRHO2.433e-3872.22Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
BADH_SPIOL4.588e-3770.37Betaine aldehyde dehydrogenase, chloroplastic OS=S... [more]
BADH_ORYSJ1.804e-3366.06Betaine aldehyde dehydrogenase OS=Oryza sativa sub... [more]
BADH_HORVU7.844e-2960.91Betaine aldehyde dehydrogenase OS=Hordeum vulgare ... [more]
AL1B1_PONAB1.299e-1541.75Aldehyde dehydrogenase X, mitochondrial OS=Pongo a... [more]
AL1B1_RAT1.697e-1540.71Aldehyde dehydrogenase X, mitochondrial OS=Rattus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-460 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-23_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504967 ID=CF504967; Name=CF504967; organism=Citrus sinensis; type=EST; length=348bp
GAGAAAAGGAAAAATGGCGATGGCGATCCCAATCCCAAGTCGTCAGCTGT
TCATCAACGGTGAATGGAGAGAGCCCGTTCTCAAGAAACGCATCCCAATC
GTTAATCCCACCACTGAAGAGATCGTCGGTGATATTCCAGCAGCTACCGC
TGAAGATGTTGAGCTGGCTGTGGATGCCGCCCGTCAAGCACTTTCTAGAA
ACAAAGGGAAGGATTGGTCCTCTGCATCCGGGGCATTTCGTGCTAAGTAT
TTGCGTGCTATTGCTGCTAAGATAACAGAGAGGAAGTCTGAACTGGCAAA
CCTTGAAACGATTGATTGTGGGAAGCCACTGGGAGAAGCTGTTTGGGA
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