CF504982

Overview
NameCF504982
Unique NameCF504982
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504982_ssr10 microsatellite CF504982_ssr10:10..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9537 contig Csv1_Contig9537:27..548. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504982 vs. ExPASy Swiss-Prot
Match: HAT4_ARATH (Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.586e-17
Identity = 54/113 (47.79%), Postives = 72/113 (63.72%), Query Frame = 3
Query:  165 MAEKDDLGLSLSLSFPQNHHSLQLNLMPSSACSTSPSGFSL-QKTPWNEALFPSSDPNSESCRAETRSFLRGIDVNRLPSHAD-NEEEXXXXXXXXXXXXXXGKRSEREPNGD 497
            M EKDDLGLSL L+FP+   +L+ N  PS + + S S F L +++ WNE+ F SS PNS+S + ETR+F+RGIDVNR PS A+  +E+              GKRSERE + D
Sbjct:    2 MFEKDDLGLSLGLNFPKKQINLKSN--PSVSVTPSSSSFGLFRRSSWNES-FTSSVPNSDSSQKETRTFIRGIDVNRPPSTAEYGDEDAGVSSPNSTVSSSTGKRSEREEDTD 111          
BLAST of CF504982 vs. ExPASy Swiss-Prot
Match: HAT2_ARATH (Homeobox-leucine zipper protein HAT2 OS=Arabidopsis thaliana GN=HAT2 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 7.066e-12
Identity = 46/108 (42.59%), Postives = 57/108 (52.78%), Query Frame = 3
Query:  165 MAEKDDLGLSLSLSFPQNHHSLQLNLMPSSACSTSPSGFSLQKTPWNEALFPSSDPNSESCRAETRSFLRGIDVNRLPSHADNEEE-XXXXXXXXXXXXXXGKRSERE 485
            M  K+DLGLSLSL F QNH+ LQ+NL P+S+ S      +LQ+ PWN+   P+SD             LR IDVN  PS  + EE+               GKRSERE
Sbjct:    2 MMGKEDLGLSLSLGFSQNHNPLQMNLNPNSSLSN-----NLQRLPWNQTFDPTSD-------------LRKIDVNSFPSTVNCEEDTGVSSPNSTISSTISGKRSERE 91          
BLAST of CF504982 vs. ExPASy Swiss-Prot
Match: HAT1_ARATH (Homeobox-leucine zipper protein HAT1 OS=Arabidopsis thaliana GN=HAT1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.685e-11
Identity = 45/86 (52.33%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  165 MAEKDDLGLSLSLSFPQNHHSLQLNLMPSSACSTSPSGFSLQKTPWNEALFPSSDPNSESCRAETRSFLRGIDVNRLPSHADNEEE 422
            M  K+DLGLSLSL F QNH  LQLNL P+S    SP   +LQ  PWN+ L  SSD   +        FLR IDVN LP+  D EEE
Sbjct:    2 MMGKEDLGLSLSLGFAQNH-PLQLNLKPTS----SPMS-NLQMFPWNQTLVSSSDQQKQQ-------FLRKIDVNSLPTTVDLEEE 74          
The following BLAST results are available for this feature:
BLAST of CF504982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HAT4_ARATH5.586e-1747.79Homeobox-leucine zipper protein HAT4 OS=Arabidopsi... [more]
HAT2_ARATH7.066e-1242.59Homeobox-leucine zipper protein HAT2 OS=Arabidopsi... [more]
HAT1_ARATH2.685e-1152.33Homeobox-leucine zipper protein HAT1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-475 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-25_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504982 ID=CF504982; Name=CF504982; organism=Citrus sinensis; type=EST; length=523bp
TTCTTCCTTTCTCTCTCTCTCTCTCTCTTTGGAGGCACAAAATTTCTCCT
GTTACTCGAATAAAGAGCCGTTTGAACAAGAACAAGAAAACACCTTCAAA
TACTATACAAATACTTCAAATAATTTAAAGCTAGAGCTGTTTGAGCAAGA
ACAAGAAAACAGCCATGGCTGAGAAAGATGATCTGGGTTTGAGTCTTAGC
TTGAGCTTCCCTCAAAATCACCATTCTTTGCAGCTAAATCTCATGCCTTC
TTCTGCTTGTTCCACTTCTCCTTCTGGTTTCAGTCTCCAAAAAACCCCTT
GGAACGAGGCCTTATTCCCATCTTCAGATCCAAACTCTGAGTCTTGTCGC
GCCGAGACCCGATCATTTCTTAGAGGAATCGACGTGAATCGATTGCCATC
ACATGCAGATAACGAAGAAGAAGTGGGCGTCTCATCTCCTAACAGCACGA
TTTCGAGCGTTAGCGGCAAGAGAAGCGAGCGGGAACCTAATGGAGATGAG
CTCGAAATGGAGAGAGCTTGCTC
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