CF504991

Overview
NameCF504991
Unique NameCF504991
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length293
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504991 vs. ExPASy Swiss-Prot
Match: TRXB2_ARATH (Thioredoxin reductase 2 OS=Arabidopsis thaliana GN=NTR2 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.351e-28
Identity = 60/97 (61.86%), Postives = 72/97 (74.23%), Query Frame = 2
Query:    2 CIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTRDRFQKSTSNPRPFKVFTD 292
            CI+GSGP            ELKP+LFEGWMANDIAPGGQLTTT+DVENFPGFP+GILG D++++ R QS RFGT IFT +   K   + +PFK+FTD
Sbjct:   62 CIVGSGPAAHTAAIYASRAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGIDIVEKFRKQSERFGTTIFT-ETVNKVDFSSKPFKLFTD 157          
BLAST of CF504991 vs. ExPASy Swiss-Prot
Match: TRXB1_ARATH (Thioredoxin reductase 1 OS=Arabidopsis thaliana GN=NTR1 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.351e-28
Identity = 61/97 (62.89%), Postives = 71/97 (73.20%), Query Frame = 2
Query:    2 CIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTRDRFQKSTSNPRPFKVFTD 292
            CI+GSGP            ELKP+LFEGWMANDIAPGGQLTTT+DVENFPGFP+GILG +L D+ R QS RFGT IFT +   K   + +PFK+FTD
Sbjct:   12 CIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIFT-ETVTKVDFSSKPFKLFTD 107          
BLAST of CF504991 vs. ExPASy Swiss-Prot
Match: TRXB1_YEAST (Thioredoxin reductase 1 OS=Saccharomyces cerevisiae GN=TRR1 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 1.928e-22
Identity = 51/96 (53.12%), Postives = 66/96 (68.75%), Query Frame = 2
Query:    5 IIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTRDRFQKSTSNPRPFKVFTD 292
            IIGSGP            E+KPIL+EG MAN IA GGQLTTT+++ENFPGFP G+ G +LMDR R QS +FGT+I T +   K   + +PFK++T+
Sbjct:    8 IIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEIIT-ETVSKVDLSSKPFKLWTE 102          
BLAST of CF504991 vs. ExPASy Swiss-Prot
Match: TRXB_NEUCR (Thioredoxin reductase OS=Neurospora crassa GN=cys-9 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.325e-22
Identity = 52/96 (54.17%), Postives = 66/96 (68.75%), Query Frame = 2
Query:    5 IIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTRDRFQKSTSNPRPFKVFTD 292
            IIGSGP            ELKP+L+EG+MAN IA GGQLTTT+++ENFPGFP GI+G +LMD+ + QS RFGTQI + +   K   + RPFK  T+
Sbjct:    7 IIGSGPAAHTAAIYLARAELKPVLYEGFMANGIAAGGQLTTTTEIENFPGFPDGIMGQELMDKMKAQSERFGTQIIS-ETVAKVDLSARPFKYATE 101          
BLAST of CF504991 vs. ExPASy Swiss-Prot
Match: TRXB_DEBHA (Thioredoxin reductase OS=Debaryomyces hansenii GN=TRR1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.325e-22
Identity = 52/96 (54.17%), Postives = 65/96 (67.71%), Query Frame = 2
Query:    5 IIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTRDRFQKSTSNPRPFKVFTD 292
            IIGSGP            E+KP L+EG +AN  A GGQLTTT+DVENFPGFP+GI G +LMD+ R QS+RFGT I T +   K   + RPFK++T+
Sbjct:    8 IIGSGPAAHTAAIYLSRAEIKPTLYEGMLANGTAAGGQLTTTTDVENFPGFPKGINGTELMDQMREQSVRFGTDIIT-ETISKCDLSSRPFKLWTE 102          
BLAST of CF504991 vs. ExPASy Swiss-Prot
Match: TRXB_YARLI (Thioredoxin reductase OS=Yarrowia lipolytica GN=TRR1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.566e-22
Identity = 51/96 (53.12%), Postives = 64/96 (66.67%), Query Frame = 2
Query:    5 IIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTRDRFQKSTSNPRPFKVFTD 292
            IIGSGP            E+KP L+EG MAN IA GGQLTTT+++ENFPGFP GI+G  LM+  R QS+RFGT+I T +   K   + RPFK +T+
Sbjct:    8 IIGSGPAAHTAAIYLSRAEIKPTLYEGMMANGIAAGGQLTTTTEIENFPGFPDGIMGSQLMEDMRKQSIRFGTEIIT-ETVSKVDLSQRPFKYWTE 102          
BLAST of CF504991 vs. ExPASy Swiss-Prot
Match: TRXB_KLULA (Thioredoxin reductase, mitochondrial OS=Kluyveromyces lactis GN=TRR1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.249e-21
Identity = 49/96 (51.04%), Postives = 65/96 (67.71%), Query Frame = 2
Query:    5 IIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTRDRFQKSTSNPRPFKVFTD 292
            IIGSGP            E+KP L+EG+MAN IA GGQLTTT+++ENFPGFP G+ G +LMDR + QS++FGT + T +   K   + RPFK +T+
Sbjct:   38 IIGSGPAAHTAAIYLARAEIKPTLYEGFMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMKAQSIKFGTDVIT-ETVSKVDLSSRPFKFWTE 132          
BLAST of CF504991 vs. ExPASy Swiss-Prot
Match: TRXB_PNECA (Thioredoxin reductase OS=Pneumocystis carinii GN=TRR1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.632e-21
Identity = 53/92 (57.61%), Postives = 61/92 (66.30%), Query Frame = 2
Query:    5 IIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTRDRFQKSTSNPRPFK 280
            IIGSGP            ELKPIL+EG +AN IAPGGQLTTT+DVEN+PGFP GILG  LM+  R QS ++G QI T D   K   + RPFK
Sbjct:    7 IIGSGPSGHTAAIYLGRAELKPILYEGMLANGIAPGGQLTTTTDVENYPGFPDGILGPSLMEAFRKQSEKYGAQIIT-DTVSKLDLSKRPFK 97          
BLAST of CF504991 vs. ExPASy Swiss-Prot
Match: TRXB_CANGA (Thioredoxin reductase OS=Candida glabrata GN=TRR1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.783e-21
Identity = 49/96 (51.04%), Postives = 65/96 (67.71%), Query Frame = 2
Query:    5 IIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTRDRFQKSTSNPRPFKVFTD 292
            IIGSGP            E+KP ++EG +AN IA GGQLTTT+++ENFPGFP G+ G +LMDR R QS +FGT+I T +   K   + RPFK++T+
Sbjct:    8 IIGSGPAAHTAAIYLARAEIKPTMYEGMLANGIAAGGQLTTTTEIENFPGFPDGMTGSELMDRMRAQSTKFGTEIIT-ETIAKVDLSSRPFKLWTE 102          
BLAST of CF504991 vs. ExPASy Swiss-Prot
Match: TRXB_ASHGO (Thioredoxin reductase OS=Ashbya gossypii GN=TRR1 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.098e-21
Identity = 47/96 (48.96%), Postives = 65/96 (67.71%), Query Frame = 2
Query:    5 IIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTRDRFQKSTSNPRPFKVFTD 292
            IIGSGP            E+KP L+EG  AN +A GGQLTTT+++ENFPGFP G+ G DLM+R + QS++FGT++ T +   K   + RPFK++T+
Sbjct:    8 IIGSGPAAHTAAIYLARAEIKPTLYEGMFANGVAAGGQLTTTTEIENFPGFPDGLTGSDLMERMKAQSVKFGTEVVT-ETVAKVDLSARPFKLWTE 102          
The following BLAST results are available for this feature:
BLAST of CF504991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
TRXB2_ARATH2.351e-2861.86Thioredoxin reductase 2 OS=Arabidopsis thaliana GN... [more]
TRXB1_ARATH2.351e-2862.89Thioredoxin reductase 1 OS=Arabidopsis thaliana GN... [more]
TRXB1_YEAST1.928e-2253.13Thioredoxin reductase 1 OS=Saccharomyces cerevisia... [more]
TRXB_NEUCR7.325e-2254.17Thioredoxin reductase OS=Neurospora crassa GN=cys-... [more]
TRXB_DEBHA7.325e-2254.17Thioredoxin reductase OS=Debaryomyces hansenii GN=... [more]
TRXB_YARLI9.566e-2253.13Thioredoxin reductase OS=Yarrowia lipolytica GN=TR... [more]
TRXB_KLULA1.249e-2151.04Thioredoxin reductase, mitochondrial OS=Kluyveromy... [more]
TRXB_PNECA1.632e-2157.61Thioredoxin reductase OS=Pneumocystis carinii GN=T... [more]
TRXB_CANGA2.783e-2151.04Thioredoxin reductase OS=Candida glabrata GN=TRR1 ... [more]
TRXB_ASHGO8.098e-2148.96Thioredoxin reductase OS=Ashbya gossypii GN=TRR1 P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-484 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-25_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504991 ID=CF504991; Name=CF504991; organism=Citrus sinensis; type=EST; length=293bp
CTGCATCATCGGCAGCGGCCCCGCCGCCCACACTGCCGCCATCTATGCCG
CCCGAGCCGAGCTCAAACCCATTCTCTTCGAGGGCTGGATGGCCAATGAT
ATTGCGCCTGGTGGCCAACTCACCACCACCTCCGACGTCGAGAATTTCCC
CGGTTTTCCCCAGGGCATTCTCGGGGGCGACTTGATGGATCGCTGCCGCA
ACCAGTCTCTCCGTTTCGGCACCCAGATTTTTACCCGAGACCGTTTCCAA
AAGTCGACTTCAAATCCCCGCCCTTTTAAAGTTTTTACAGATT
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