CF505028
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX8_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2) HSP 1 Score: 233.417 bits (594), Expect = 4.467e-61 Identity = 116/122 (95.08%), Postives = 120/122 (98.36%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 IHLTEPEGDIL+FLTGQEEID ACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDP PPGKRKVVVATNIAEASLTIDGI+YV+DPGFAKQNVYNPKQGL+SLVITPISQASAKQRA Sbjct: 717 IHLTEPEGDILVFLTGQEEIDSACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPPPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLVITPISQASAKQRA 838
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX8_DICDI (ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 2.454e-59 Identity = 97/122 (79.51%), Postives = 111/122 (90.98%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 IHL+EP GDILLFLTGQEEID ACQ LYERMK LG NVP+LIILPVYSALPSEMQ++IF+PAPPG RKVV+ATNIAE SLTIDGI+YVIDPGF+KQ +NPK G+DSLV+ PISQA+A+QR+ Sbjct: 710 IHLSEPPGDILLFLTGQEEIDAACQILYERMKSLGSNVPDLIILPVYSALPSEMQTKIFEPAPPGSRKVVIATNIAETSLTIDGIYYVIDPGFSKQKCFNPKNGMDSLVVAPISQAAARQRS 831 HSP 2 Score: 45.0542 bits (105), Expect = 2.454e-59 Identity = 19/22 (86.36%), Postives = 21/22 (95.45%), Query Frame = 2 Query: 368 GRAGRTGPGKWYRLYTESAYRN 433 GRAGRTGPGK YRLYTESA++N Sbjct: 832 GRAGRTGPGKCYRLYTESAFKN 853
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: MOG5_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=2 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 7.638e-53 Identity = 97/122 (79.51%), Postives = 111/122 (90.98%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 IHLTEP GD+L+FLTGQEEID +C+ LYERMK +G +VPELIILPVY ALPSEMQ+RIFDPAP GKRKVV+ATNIAE SLTIDGIFYV+DPGF KQ +YNPK G+DSLV+TPISQA+AKQR+ Sbjct: 742 IHLTEPPGDVLVFLTGQEEIDTSCEVLYERMKSMGPDVPELIILPVYGALPSEMQTRIFDPAPAGKRKVVIATNIAETSLTIDGIFYVVDPGFVKQKIYNPKSGMDSLVVTPISQAAAKQRS 863
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 7.638e-53 Identity = 100/122 (81.97%), Postives = 109/122 (89.34%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 IHLTEP GDIL+FLTGQEEID AC+ LYERMK LG +VPELIILPVYSALPSEMQ+RIFDPAPPG RKVV+ATNIAE SLTIDGI+YV+DPGF KQ VYN K G+D LV+TPISQA AKQRA Sbjct: 791 IHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRA 912
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX8_HUMAN (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 7.638e-53 Identity = 100/122 (81.97%), Postives = 109/122 (89.34%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 IHLTEP GDIL+FLTGQEEID AC+ LYERMK LG +VPELIILPVYSALPSEMQ+RIFDPAPPG RKVV+ATNIAE SLTIDGI+YV+DPGF KQ VYN K G+D LV+TPISQA AKQRA Sbjct: 767 IHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRA 888
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: PRP22_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS=Schizosaccharomyces pombe GN=prp22 PE=2 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 7.398e-48 Identity = 89/122 (72.95%), Postives = 109/122 (89.34%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 IHL+E GDIL+FLTGQEEID +C+ LYER K LG ++PEL+ILPVYSALPSE+QSRIF+PAPPG RKVV+ATNIAE SLTIDGI+YV+DPGF KQ+ ++PK G+DSL++TPISQA A+QR+ Sbjct: 713 IHLSEGPGDILVFLTGQEEIDTSCEILYERSKMLGDSIPELVILPVYSALPSEIQSRIFEPAPPGGRKVVIATNIAETSLTIDGIYYVVDPGFVKQSCFDPKLGMDSLIVTPISQAQARQRS 834
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX16_PANTR (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes GN=DHX16 PE=3 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 4.201e-43 Identity = 84/155 (54.19%), Postives = 110/155 (70.97%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAWAC---------RAYGAWKMVPVIHRERLPQLR 438 IH+T+P GDIL+FLTGQEEI+ AC+ L +R + LG + EL++LP+Y+ LPS+MQ+RIF P PPG RKVVVATNIAE SLTI+GI YV+DPGF KQ YNP+ G++SL +TP S+ASA QRA R Y AW + +P+++ Sbjct: 605 IHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQ 759
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX16_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2) HSP 1 Score: 173.711 bits (439), Expect = 4.201e-43 Identity = 84/155 (54.19%), Postives = 110/155 (70.97%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAWAC---------RAYGAWKMVPVIHRERLPQLR 438 IH+T+P GDIL+FLTGQEEI+ AC+ L +R + LG + EL++LP+Y+ LPS+MQ+RIF P PPG RKVVVATNIAE SLTI+GI YV+DPGF KQ YNP+ G++SL +TP S+ASA QRA R Y AW + +P+++ Sbjct: 602 IHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQ 756
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: PRP22_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 OS=Saccharomyces cerevisiae GN=PRP22 PE=1 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 9.358e-43 Identity = 80/121 (66.12%), Postives = 101/121 (83.47%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQR 363 IH+ E GDIL+FLTGQEEID C+ LY+R+K LG ++ EL+ILPVYSALPSE+QS+IF+P P G RKVV ATNIAE S+TIDGI+YV+DPGFAK N+YN + G++ L+++PISQA A QR Sbjct: 685 IHINEGPGDILVFLTGQEEIDSCCEILYDRVKTLGDSIGELLILPVYSALPSEIQSKIFEPTPKGSRKVVFATNIAETSITIDGIYYVVDPGFAKINIYNARAGIEQLIVSPISQAQANQR 805
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX16_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 2.305e-41 Identity = 82/155 (52.90%), Postives = 109/155 (70.32%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAWAC---------RAYGAWKMVPVIHRERLPQLR 438 IH+TEP GDIL+FLTGQEE+D A + L R +GLG + ELII +YS LP+++Q++IF+P PP RKVV+ATNIAE SLTIDGI YVIDPGF KQ ++NP+ G++SLVITP+S+ASA QR R + AW + +P+++ Sbjct: 669 IHITEPLGDILVFLTGQEEVDQAAEMLQTRTRGLGTKIKELIITRIYSTLPTDLQAKIFEPTPPNARKVVLATNIAETSLTIDGIIYVIDPGFCKQKMFNPRTGMESLVITPVSRASANQRKGRAGRVAPGKCFRLFTAWAFDNELEENTIPEIQ 823 The following BLAST results are available for this feature:
BLAST of CF505028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >CF505028 ID=CF505028; Name=CF505028; organism=Citrus sinensis; type=EST; length=503bpback to top |