CF505028

Overview
NameCF505028
Unique NameCF505028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX8_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 4.467e-61
Identity = 116/122 (95.08%), Postives = 120/122 (98.36%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            IHLTEPEGDIL+FLTGQEEID ACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDP PPGKRKVVVATNIAEASLTIDGI+YV+DPGFAKQNVYNPKQGL+SLVITPISQASAKQRA
Sbjct:  717 IHLTEPEGDILVFLTGQEEIDSACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPPPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLVITPISQASAKQRA 838          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX8_DICDI (ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 2.454e-59
Identity = 97/122 (79.51%), Postives = 111/122 (90.98%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            IHL+EP GDILLFLTGQEEID ACQ LYERMK LG NVP+LIILPVYSALPSEMQ++IF+PAPPG RKVV+ATNIAE SLTIDGI+YVIDPGF+KQ  +NPK G+DSLV+ PISQA+A+QR+
Sbjct:  710 IHLSEPPGDILLFLTGQEEIDAACQILYERMKSLGSNVPDLIILPVYSALPSEMQTKIFEPAPPGSRKVVIATNIAETSLTIDGIYYVIDPGFSKQKCFNPKNGMDSLVVAPISQAAARQRS 831          

HSP 2 Score: 45.0542 bits (105), Expect = 2.454e-59
Identity = 19/22 (86.36%), Postives = 21/22 (95.45%), Query Frame = 2
Query:  368 GRAGRTGPGKWYRLYTESAYRN 433
            GRAGRTGPGK YRLYTESA++N
Sbjct:  832 GRAGRTGPGKCYRLYTESAFKN 853          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: MOG5_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 7.638e-53
Identity = 97/122 (79.51%), Postives = 111/122 (90.98%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            IHLTEP GD+L+FLTGQEEID +C+ LYERMK +G +VPELIILPVY ALPSEMQ+RIFDPAP GKRKVV+ATNIAE SLTIDGIFYV+DPGF KQ +YNPK G+DSLV+TPISQA+AKQR+
Sbjct:  742 IHLTEPPGDVLVFLTGQEEIDTSCEVLYERMKSMGPDVPELIILPVYGALPSEMQTRIFDPAPAGKRKVVIATNIAETSLTIDGIFYVVDPGFVKQKIYNPKSGMDSLVVTPISQAAAKQRS 863          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 7.638e-53
Identity = 100/122 (81.97%), Postives = 109/122 (89.34%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            IHLTEP GDIL+FLTGQEEID AC+ LYERMK LG +VPELIILPVYSALPSEMQ+RIFDPAPPG RKVV+ATNIAE SLTIDGI+YV+DPGF KQ VYN K G+D LV+TPISQA AKQRA
Sbjct:  791 IHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRA 912          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX8_HUMAN (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 7.638e-53
Identity = 100/122 (81.97%), Postives = 109/122 (89.34%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            IHLTEP GDIL+FLTGQEEID AC+ LYERMK LG +VPELIILPVYSALPSEMQ+RIFDPAPPG RKVV+ATNIAE SLTIDGI+YV+DPGF KQ VYN K G+D LV+TPISQA AKQRA
Sbjct:  767 IHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRA 888          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: PRP22_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS=Schizosaccharomyces pombe GN=prp22 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 7.398e-48
Identity = 89/122 (72.95%), Postives = 109/122 (89.34%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            IHL+E  GDIL+FLTGQEEID +C+ LYER K LG ++PEL+ILPVYSALPSE+QSRIF+PAPPG RKVV+ATNIAE SLTIDGI+YV+DPGF KQ+ ++PK G+DSL++TPISQA A+QR+
Sbjct:  713 IHLSEGPGDILVFLTGQEEIDTSCEILYERSKMLGDSIPELVILPVYSALPSEIQSRIFEPAPPGGRKVVIATNIAETSLTIDGIYYVVDPGFVKQSCFDPKLGMDSLIVTPISQAQARQRS 834          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX16_PANTR (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes GN=DHX16 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.201e-43
Identity = 84/155 (54.19%), Postives = 110/155 (70.97%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAWAC---------RAYGAWKMVPVIHRERLPQLR 438
            IH+T+P GDIL+FLTGQEEI+ AC+ L +R + LG  + EL++LP+Y+ LPS+MQ+RIF P PPG RKVVVATNIAE SLTI+GI YV+DPGF KQ  YNP+ G++SL +TP S+ASA QRA            R Y AW     +    +P+++
Sbjct:  605 IHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQ 759          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX16_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 4.201e-43
Identity = 84/155 (54.19%), Postives = 110/155 (70.97%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAWAC---------RAYGAWKMVPVIHRERLPQLR 438
            IH+T+P GDIL+FLTGQEEI+ AC+ L +R + LG  + EL++LP+Y+ LPS+MQ+RIF P PPG RKVVVATNIAE SLTI+GI YV+DPGF KQ  YNP+ G++SL +TP S+ASA QRA            R Y AW     +    +P+++
Sbjct:  602 IHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQ 756          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: PRP22_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 OS=Saccharomyces cerevisiae GN=PRP22 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 9.358e-43
Identity = 80/121 (66.12%), Postives = 101/121 (83.47%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQR 363
            IH+ E  GDIL+FLTGQEEID  C+ LY+R+K LG ++ EL+ILPVYSALPSE+QS+IF+P P G RKVV ATNIAE S+TIDGI+YV+DPGFAK N+YN + G++ L+++PISQA A QR
Sbjct:  685 IHINEGPGDILVFLTGQEEIDSCCEILYDRVKTLGDSIGELLILPVYSALPSEIQSKIFEPTPKGSRKVVFATNIAETSITIDGIYYVVDPGFAKINIYNARAGIEQLIVSPISQAQANQR 805          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX16_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.305e-41
Identity = 82/155 (52.90%), Postives = 109/155 (70.32%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAWAC---------RAYGAWKMVPVIHRERLPQLR 438
            IH+TEP GDIL+FLTGQEE+D A + L  R +GLG  + ELII  +YS LP+++Q++IF+P PP  RKVV+ATNIAE SLTIDGI YVIDPGF KQ ++NP+ G++SLVITP+S+ASA QR             R + AW     +    +P+++
Sbjct:  669 IHITEPLGDILVFLTGQEEVDQAAEMLQTRTRGLGTKIKELIITRIYSTLPTDLQAKIFEPTPPNARKVVLATNIAETSLTIDGIIYVIDPGFCKQKMFNPRTGMESLVITPVSRASANQRKGRAGRVAPGKCFRLFTAWAFDNELEENTIPEIQ 823          
The following BLAST results are available for this feature:
BLAST of CF505028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
DHX8_ARATH4.467e-6195.08Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX8_DICDI2.454e-5979.51ATP-dependent RNA helicase dhx8 OS=Dictyostelium d... [more]
MOG5_CAEEL7.638e-5379.51Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX8_MOUSE7.638e-5381.97ATP-dependent RNA helicase DHX8 OS=Mus musculus GN... [more]
DHX8_HUMAN7.638e-5381.97ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN... [more]
PRP22_SCHPO7.398e-4872.95Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX16_PANTR4.201e-4354.19Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX16_HUMAN4.201e-4354.19Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP22_YEAST9.358e-4366.12Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX16_DICDI2.305e-4152.90Putative pre-mRNA-splicing factor ATP-dependent RN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-521 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-25_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF505028 ID=CF505028; Name=CF505028; organism=Citrus sinensis; type=EST; length=503bp
ATCCATTTGACAGAGCCTGAAGGTGATATTCTTCTCTTCTTGACTGGGCA
GGAGGAGATTGATTTTGCATGCCAGTCTCTTTATGAGAGGATGAAAGGTC
TAGGTAAAAATGTTCCTGAGCTAATCATATTACCGGTTTACAGTGCCCTC
CCTAGTGAAATGCAATCTAGAATATTTGACCCTGCCCCGCCAGGAAAGAG
AAAAGTGGTTGTGGCCACTAATATTGCTGAAGCTTCTTTGACAATTGATG
GAATATTCTATGTTATCGATCCTGGGTTTGCGAAACAGAATGTTTATAAT
CCAAAGCAAGGGCTTGATTCACTGGTCATAACTCCCATTTCACAAGCATC
AGCCAAGCAGCGAGCTTGGGCGTGCAGGGCGTACGGGGCCTGGAAAATGG
TACCGGTTATACACAGAGAGCGCTTACCGCAATTGAGATGTCCCCTACAT
CAATTCCAGAAATCCAAGGATCAATCTTTGGATTTACTACTCTTACAATG
AAG
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