CF505039

Overview
NameCF505039
Unique NameCF505039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length403
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF505039 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.438e-19
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = 2
Query:   95 TTYPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMK 400
            T  PSP +VV LLKSQ I+RV+ YD D ++L A A++ + V+++ PN++L   +   +   NWV  N++ YYPAT I  +AVG+EV     N    LV A+K
Sbjct:   32 TNMPSPTQVVALLKSQNINRVRLYDADRSMLLAFAHTGVQVIISVPNDQLLGISQSNATAANWVTRNVAAYYPATNITTIAVGSEVLTSLTNAASVLVSALK 133          
BLAST of CF505039 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.686e-18
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:  104 PSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKN 403
            P P +VV LLK+Q I  ++ Y+ D  +L ALAN+ I V+++ PN++L       S   NWV+ N+  +YPAT I AV+VG+EV     N  P LV A+KN
Sbjct:   44 PHPTQVVALLKAQEIRHIRLYNADPGLLIALANTGIKVIISIPNDQLLGIGQSNSTAANWVKRNVIAHYPATMITAVSVGSEVLTSLSNAAPVLVSAIKN 143          
BLAST of CF505039 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.748e-18
Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:  104 PSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKN 403
            PSP +V EL++   I  V+ YD +  VL A AN+ I +++  PN +L   A  QS  D W+  NI  YYP+TKI +++VG EV   P N T  ++PAM+N
Sbjct:   39 PSPNRVSELIQHLNIKFVRIYDANIDVLKAFANTGIELMIGVPNADLLAFAQFQSNVDTWLSNNILPYYPSTKITSISVGLEVTEAPDNATGLVLPAMRN 138          

HSP 2 Score: 24.6386 bits (52), Expect = 6.748e-18
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 1
Query:   64 KVGINYGRVANNLP 105
            K+GI YGR A+NLP
Sbjct:   26 KIGICYGRNADNLP 39          
BLAST of CF505039 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.755e-18
Identity = 41/101 (40.59%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  104 PSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPK-NTTPFLVPAMKN 403
            P+P KVV+L++   I  V+ YD +S VL A  N+ I +++  PN +L+  +  QS  D W++ ++  YYP TKI  + VG E   DP  N + F+VPAM+N
Sbjct:   38 PTPSKVVQLIQQHNIKYVRIYDYNSQVLKAFGNTSIELMIGVPNSDLNAFSQSQSNVDTWLKNSVLPYYPTTKITYITVGAESTDDPHINASSFVVPAMQN 138          

HSP 2 Score: 25.409 bits (54), Expect = 6.755e-18
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 1
Query:   61 GKVGINYGRVANNLP 105
            GKVG+ YGR A++LP
Sbjct:   24 GKVGVCYGRSADDLP 38          
BLAST of CF505039 vs. ExPASy Swiss-Prot
Match: GUB_NICPL (Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 7.086e-17
Identity = 44/107 (41.12%), Postives = 64/107 (59.81%), Query Frame = 2
Query:   89 LQTTYPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEV--FADPKNTTPFLVPAMKN 403
            L    P   +VV+L KS+ I R++ YD + A L AL  S+I V++  PN +L   AA+ S  +NWVQ N+  ++PA K   +AVGNEV       + T +L+PAM+N
Sbjct:   40 LGNNLPPASQVVQLYKSKNIRRMRLYDPNQAALQALRGSNIEVMLGVPNSDLQNIAANPSNANNWVQRNVRNFWPAVKFRYIAVGNEVSPVTGTSSLTRYLLPAMRN 146          
BLAST of CF505039 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.325e-17
Identity = 37/100 (37.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:  104 PSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFA-DPKNTTPFLVPAMK 400
            PSP + +  +KS +   VK YD D   L  L+ +++ V +  PN +++  +++Q+  D WV+ NI  YYP T+I  V VGNE+ + +  N +  LVPAM+
Sbjct:   54 PSPYQSINFIKSIKAGHVKLYDADPESLTLLSQTNLYVTITVPNHQITALSSNQTIADEWVRTNILPYYPQTQIRFVLVGNEILSYNSGNVSVNLVPAMR 153          

HSP 2 Score: 28.4906 bits (62), Expect = 9.325e-17
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 1
Query:   64 KVGINYGRVANNLP 105
            K+GINYGR  NNLP
Sbjct:   41 KIGINYGRRGNNLP 54          
BLAST of CF505039 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.046e-16
Identity = 35/101 (34.65%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  104 PSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEV-FADPKNTTPFLVPAMKN 403
            P P + V+LL+S  I +V+ Y  D A++ ALA + + +V+   N ++   A+D +    W+ +N+  +YPA+KI  + VGNE+  ++  N    L+PAM+N
Sbjct:   38 PPPSETVKLLQSTSIQKVRLYGADPAIIKALAGTGVGIVIGAANGDVPSLASDPNAATQWINSNVLPFYPASKIMLITVGNEILMSNDPNLVNQLLPAMQN 138          

HSP 2 Score: 28.1054 bits (61), Expect = 2.046e-16
Identity = 10/18 (55.56%), Postives = 15/18 (83.33%), Query Frame = 1
Query:   67 VGINYGRVANNLPVAGES 120
            +G+NYG+VA+NLP   E+
Sbjct:   26 IGVNYGQVADNLPPPSET 43          
BLAST of CF505039 vs. ExPASy Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.692e-16
Identity = 43/103 (41.75%), Postives = 58/103 (56.31%), Query Frame = 2
Query:   95 TTYPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKN 403
            T  P P  +V LLKSQ+I  V+ YD +S +L A AN+ I V+V   NEE+ K     S    WV  N++ Y P+T I A+AVG+EV     +  P L  A+ N
Sbjct:   35 TNMPPPSDIVTLLKSQQITHVRLYDANSHMLKAFANTSIEVMVGVTNEEILKIGRFPSAAAAWVNKNVAAYIPSTNITAIAVGSEVLTTIPHVAPILASALNN 137          
BLAST of CF505039 vs. ExPASy Swiss-Prot
Match: E1314_ARATH (Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500/F10A12.18 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.675e-15
Identity = 36/107 (33.64%), Postives = 58/107 (54.21%), Query Frame = 2
Query:   86 ELQTTYPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNT-TPFLVPAMKN 403
            ++    PSP +V  LL+S  I RVK YD D  VL + +NS +  ++   NE L   + D +   +W+Q  +  +   T+I ++ VGNE+F    +     L+PAMK+
Sbjct:   35 QIANNLPSPARVAVLLRSLNITRVKLYDADPNVLFSFSNSQVDFMIGLGNEYLQNMSTDPTKAQDWLQQRLEPHISKTRITSIVVGNEIFKTNDHVLIQSLLPAMKS 141          

HSP 2 Score: 29.261 bits (64), Expect = 3.675e-15
Identity = 11/13 (84.62%), Postives = 13/13 (100.00%), Query Frame = 1
Query:   67 VGINYGRVANNLP 105
            VGINYG++ANNLP
Sbjct:   29 VGINYGQIANNLP 41          
BLAST of CF505039 vs. ExPASy Swiss-Prot
Match: E1310_ARATH (Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis thaliana GN=At5g42100 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.767e-15
Identity = 41/107 (38.32%), Postives = 57/107 (53.27%), Query Frame = 2
Query:   86 ELQTTYPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNT-TPFLVPAMKN 403
            ++    P P+ V+ LLKS    +VK YD D   L A A S   + VA  NE L++  +D      WV+ N+  Y P TKI A+ VGNEV    ++  T  L PAM++
Sbjct:   33 QVANNLPPPKNVIPLLKSVGATKVKLYDADPQALRAFAGSGFELTVALGNEYLAQ-MSDPIKAQGWVKENVQAYLPNTKIVAIVVGNEVLTSNQSALTAALFPAMQS 138          

HSP 2 Score: 29.261 bits (64), Expect = 4.767e-15
Identity = 11/13 (84.62%), Postives = 13/13 (100.00%), Query Frame = 1
Query:   67 VGINYGRVANNLP 105
            +GINYG+VANNLP
Sbjct:   27 IGINYGQVANNLP 39          
The following BLAST results are available for this feature:
BLAST of CF505039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
E133_ARATH4.438e-1943.14Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E132_ARATH1.686e-1844.00Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E1312_ARATH6.748e-1843.00Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
E1313_ARATH6.755e-1840.59Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]
GUB_NICPL7.086e-1741.12Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2... [more]
EA6_ARATH9.325e-1737.00Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
E137_ARATH2.046e-1634.65Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E134_ARATH2.692e-1641.75Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis ... [more]
E1314_ARATH3.675e-1533.64Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis... [more]
E1310_ARATH4.767e-1538.32Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-532 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-25_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF505039 ID=CF505039; Name=CF505039; organism=Citrus sinensis; type=EST; length=403bp
CTTGCTGCATTCTCTTCCTTCTTCTTCTTCTTTCTCGTAACCTTCGCTTT
TGCAGATACTGGCAAGGTAGGTATAAATTACGGCAGAGTTGCAAACAACT
TACCCGTCGCCGGAGAAAGTTGTGGAGCTGCTGAAATCTCAAAGAATCGA
CCGAGTTAAAACATACGACACTGACTCAGCCGTACTCGCTGCACTCGCGA
ACTCGGACATAAGCGTCGTCGTTGCGTTCCCCAATGAGGAACTCTCCAAG
GCCGCAGCTGACCAGTCATTTACTGACAACTGGGTCCAGGCCAATATCTC
CAAGTACTACCCGGCAACGAAGATCGAGGCCGTCGCAGTGGGCAACGAAG
TCTTCGCAGACCCGAAGAACACGACGCCGTTTCTCGTCCCCGCCATGAAG
AAC
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