CF505043

Overview
NameCF505043
Unique NameCF505043
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF505043 vs. ExPASy Swiss-Prot
Match: YPC1_YEAST (Alkaline ceramidase YPC1 OS=Saccharomyces cerevisiae GN=YPC1 PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 3.434e-11
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  337 WGPVTST-DWCEKNYVYSSYIAEFLNTLSNVPCILLALFGLINALRQRFEKRF 492
            WG  TST DWCE+NYV S YIAE+ NTL+N   IL A++   +A + + EKRF
Sbjct:   17 WGETTSTIDWCEENYVVSPYIAEWSNTLTNSVFILSAIYTTYSAYKNKLEKRF 69

HSP 2 Score: 26.9498 bits (58), Expect = 3.434e-11
Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 2 
Query:  518 ILAIGSMLYHATLQHMQQQGDETPM 592
            ++ +GS L+H TL++  Q  DE PM
Sbjct:   78 LVGVGSWLFHMTLKYRFQLLDELPM 102
[Close]
BLAST of CF505043 vs. ExPASy Swiss-Prot
Match: ACER3_MOUSE (Alkaline ceramidase 3 OS=Mus musculus GN=Acer3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.388e-11
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:  334 FWGPVTST-DWCEKNYVYSSYIAEFLNTLSNVPCILLALFGLINALRQRFEKRF 492
            +WGP TST DWCE+NYV + ++AEF NT+SN+  I+  +FG I  +R R EKR+
Sbjct:   10 YWGPTTSTLDWCEENYVVTLFVAEFWNTVSNLIMIIPPIFGAIQGIRDRLEKRY 63
The following BLAST results are available for this feature:
BLAST of CF505043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YPC1_YEAST3.434e-1154.72Alkaline ceramidase YPC1 OS=Saccharomyces cerevisi... [more]
ACER3_MOUSE6.388e-1153.70Alkaline ceramidase 3 OS=Mus musculus GN=Acer3 PE=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-536 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-25_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF505043 ID=CF505043; Name=CF505043; organism=Citrus sinensis; type=EST; length=605bp
CACTTGTCAGCCCATAAAATCCCCCGCCACACGCGCCCTATTTCATCCCT
CACAATTCCGCTTCACAATTTTTTCTTTCCTCTTTCTTTTTTTTTAATTA
AATTTTGTCTTTCTTAAATTAAGCTTTTCTTAAGGGGGGAAAAAAAAGAA
AAATAAAAAACAATTCAAATCAAATCAAAACAAAAATAGCTGAGGGTTTT
AGGAACAGCATAGATCTGGTTGTTGGCTAAAATGGTTTTATGAACTCTGT
AATATTATAACACGATTTTCCTGAATTGAATAATCATACCCTTTGGACAT
ATACCTTTAAGAATGGCTGATGGGTTGTCAAGCTTCTGGGGTCCGGTGAC
ATCAACTGATTGGTGTGAGAAAAATTATGTCTACTCTTCTTATATTGCAG
AGTTTCTCAACACTCTATCAAATGTACCATGCATTCTTTTGGCTCTTTTT
GGTCTTATAAATGCTTTGAGACAGCGGTTCGAGAAGAGATTTAAGTGGTC
TTCACATATCTAATATGATACTTGCCATTGGAAGCATGCTATACCATGCC
ACACTGCAACATATGCAACAACAAGGAGATGAAACACCGATGGGGGGGGG
AAATG
back to top