CF505047

Overview
NameCF505047
Unique NameCF505047
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length445
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF505047 vs. ExPASy Swiss-Prot
Match: CLH1_CITUN (Chlorophyllase-1, chloroplastic OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.449e-37
Identity = 85/146 (58.22%), Postives = 100/146 (68.49%), Query Frame = 2
Query:   17 MTALADSKPV-SVEAKPGLATALLSVFSSGPYSPKLKTVNKPWFNSFPP-KPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFL-PPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGH 445
            M A+ DSKP  SV+  P LATA L VF+ G YS K  T+     +S PP KPL IV P EKGT+ VILF HGT+LSN SYS + DH+ASHG+IVVAPQLY  + PP    E+N AA V  WL  GLQ  LPEN EAN++ VA+MGH
Sbjct:    1 MAAMVDSKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAEKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGH 146          
BLAST of CF505047 vs. ExPASy Swiss-Prot
Match: CLH1_CITSI (Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.093e-36
Identity = 83/146 (56.85%), Postives = 99/146 (67.81%), Query Frame = 2
Query:   17 MTALADSKPV-SVEAKPGLATALLSVFSSGPYSPKLKTVNKPWFNSFPP-KPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFL-PPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGH 445
            M A+ D+KP  SV+  P LATA L VF+ G YS K  T+     +S PP KPL IV P  KGT+ VILF HGT+LSN SYS + DH+ASHG+IVVAPQLY  + PP    E+N AA V  WL  GLQ  LPEN EAN++ VA+MGH
Sbjct:    1 MAAMVDAKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGH 146          
BLAST of CF505047 vs. ExPASy Swiss-Prot
Match: CLH1_ARATH (Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 7.460e-26
Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 2
Query:  155 PPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGH 445
            PPKP+ I  P   GTY V+LFFHG  L N  YS++L+H+ASHGYI+VAPQL   LPP G  EV+DA +V+NW S  L++ LP +V AN  Y +L+GH
Sbjct:   41 PPKPVRITCPTVAGTYPVVLFFHGFYLRNYFYSDVLNHIASHGYILVAPQLCKLLPPGGQVEVDDAGSVINWASENLKAHLPTSVNANGKYTSLVGH 137          
BLAST of CF505047 vs. ExPASy Swiss-Prot
Match: CLH2_ARATH (Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.178e-19
Identity = 43/97 (44.33%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  155 PPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGH 445
            PPK L +  P E+G Y V++  HG  L N+ YS L+ H++SHG+I++APQLY    P    E+   A +++WLS GL   LP  V  NL+  AL GH
Sbjct:   41 PPKQLLVATPVEEGDYPVVMLLHGYLLYNSFYSQLMLHVSSHGFILIAPQLYSIAGPDTMDEIKSTAEIMDWLSVGLNHFLPAQVTPNLSKFALSGH 137          
BLAST of CF505047 vs. ExPASy Swiss-Prot
Match: CLH0_CHEAL (Chlorophyllase type 0 OS=Chenopodium album GN=CACLH PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.570e-18
Identity = 50/128 (39.06%), Postives = 71/128 (55.47%), Query Frame = 2
Query:   80 LLSVFSSGPYSPKLKTVNKPWFNSFPPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPK---GNGEVNDAANVLNWLSTGLQSELPE---NVEANLNYVALMGH 445
            +  VF  G +      +    +    P+PL I+ P+E G Y V+LF HGT LSN  YS   +++ASHG+IVVAP+L+   PPK      E++ AA+V NW+   LQ  L      VE +L  +A+ GH
Sbjct:   34 ITDVFHKGNFQVTNNPIRVKRYEFSAPEPLIIISPKEAGVYPVLLFIHGTMLSNEDYSLFFNYIASHGFIVVAPKLFRLFPPKLPSQQDEIDMAASVANWMPLYLQVVLQRYVTGVEGDLEKLAISGH 161          
The following BLAST results are available for this feature:
BLAST of CF505047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CLH1_CITUN1.449e-3758.22Chlorophyllase-1, chloroplastic OS=Citrus unshiu P... [more]
CLH1_CITSI2.093e-3656.85Chlorophyllase-1, chloroplastic OS=Citrus sinensis... [more]
CLH1_ARATH7.460e-2655.67Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 P... [more]
CLH2_ARATH5.178e-1944.33Chlorophyllase-2, chloroplastic OS=Arabidopsis tha... [more]
CLH0_CHEAL2.570e-1839.06Chlorophyllase type 0 OS=Chenopodium album GN=CACL... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-540 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-25_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF505047 ID=CF505047; Name=CF505047; organism=Citrus sinensis; type=EST; length=445bp
AAACAATTTAGACTCAATGACAGCATTAGCCGATAGCAAGCCCGTCTCCG
TTGAAGCTAAGCCTGGTTTGGCAACGGCCTTACTATCAGTTTTTTCAAGT
GGACCTTATTCTCCGAAACTCAAGACAGTGAATAAACCATGGTTTAATAG
TTTTCCTCCAAAGCCGTTGAATATTGTTTATCCAGAAGAAAAAGGAACAT
ATGAAGTTATTTTGTTCTTCCACGGCACTGCTCTCAGCAACACAAGCTAT
TCCAATCTCTTAGACCACTTGGCTTCCCATGGATACATCGTTGTTGCCCC
TCAGTTATACGATTTTCTGCCGCCGAAAGGAAACGGAGAAGTTAACGATG
CAGCAAACGTCCTCAACTGGTTATCAACAGGCCTTCAATCAGAACTCCCG
GAAAATGTTGAAGCTAACCTAAACTACGTTGCTCTTATGGGACAC
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