CF505050

Overview
NameCF505050
Unique NameCF505050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF505050 vs. ExPASy Swiss-Prot
Match: TRNH1_ARATH (Tropinone reductase homolog At1g07440 OS=Arabidopsis thaliana GN=At1g07440 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.764e-27
Identity = 56/88 (63.64%), Postives = 71/88 (80.68%), Query Frame = 1
Query:  286 HTCSRNEADLSECIRDWKTKGFKVTGSVCDVSSRIEREKLINQVSSLFDGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYN 549
            HTC+RNE +L+EC+  W+ KGF+VTGSVCD S R EREKL+  VSS+F GKL+ILINN+G    K T++YTAEDFSF ++TN ESAY+
Sbjct:   42 HTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYH 129          
BLAST of CF505050 vs. ExPASy Swiss-Prot
Match: TRNH_DATST (Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.276e-25
Identity = 52/88 (59.09%), Postives = 68/88 (77.27%), Query Frame = 1
Query:  286 HTCSRNEADLSECIRDWKTKGFKVTGSVCDVSSRIEREKLINQVSSLFDGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYN 549
            +TCSR++ DL EC+  W+ KGFKV+G VCDVSS  +R+ L+  V+S F+GKLNILINN GTTI K    +TAED+S +M TNFE++YN
Sbjct:   45 YTCSRSQNDLDECLEKWRRKGFKVSGPVCDVSSISQRQTLMESVTSSFNGKLNILINNAGTTIPKEATNFTAEDYSIIMGTNFEASYN 132          
BLAST of CF505050 vs. ExPASy Swiss-Prot
Match: TRN2_DATST (Tropinone reductase 2 OS=Datura stramonium GN=TR2 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.406e-24
Identity = 48/88 (54.55%), Postives = 69/88 (78.41%), Query Frame = 1
Query:  286 HTCSRNEADLSECIRDWKTKGFKVTGSVCDVSSRIEREKLINQVSSLFDGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYN 549
            +TCSRN+ +L++C+  W++KGFKV  SVCD+SSR ER++L+N V++ F GKLNIL+NN G  I K   +YT ED+S +M+ NFE+AY+
Sbjct:   37 YTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYH 124          
BLAST of CF505050 vs. ExPASy Swiss-Prot
Match: TRN1_DATST (Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.194e-23
Identity = 47/88 (53.41%), Postives = 65/88 (73.86%), Query Frame = 1
Query:  286 HTCSRNEADLSECIRDWKTKGFKVTGSVCDVSSRIEREKLINQVSSLFDGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYN 549
            +TCSRNE +L EC+  W+ KG  V GSVCD+ SR ER+KL+  V+ +FDGKLNIL+NN G  I K   ++T +D++ +M TNFE+AY+
Sbjct:   49 YTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYH 136          
BLAST of CF505050 vs. ExPASy Swiss-Prot
Match: TRN2_HYONI (Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.660e-23
Identity = 48/88 (54.55%), Postives = 65/88 (73.86%), Query Frame = 1
Query:  286 HTCSRNEADLSECIRDWKTKGFKVTGSVCDVSSRIEREKLINQVSSLFDGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYN 549
            +TCSRN+ +L EC+  W++KGF V  SVCD+SSR ERE+ +  VS+ F GKLNIL+NN G  I K   +YT ED+S +M+ NFE+AY+
Sbjct:   37 YTCSRNQKELDECLTQWRSKGFNVEASVCDLSSRSEREEFMKTVSNHFHGKLNILVNNAGIVIYKEAKDYTMEDYSHIMSINFEAAYH 124          
The following BLAST results are available for this feature:
BLAST of CF505050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TRNH1_ARATH6.764e-2763.64Tropinone reductase homolog At1g07440 OS=Arabidops... [more]
TRNH_DATST1.276e-2559.09Tropinone reductase homolog OS=Datura stramonium P... [more]
TRN2_DATST2.406e-2454.55Tropinone reductase 2 OS=Datura stramonium GN=TR2 ... [more]
TRN1_DATST1.194e-2353.41Tropinone reductase 1 OS=Datura stramonium GN=TR1 ... [more]
TRN2_HYONI2.660e-2354.55Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 P... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-543 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-25_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF505050 ID=CF505050; Name=CF505050; organism=Citrus sinensis; type=EST; length=551bp
GTGAAGTTCACTTTAACTTTTATCACCTTTATTTCGAATGGCGCCTCCGA
CGAACGGCAATGGCAGGCTCAATCAGAGATGGACTGTCCAGGGAATGACT
GCGCTTGTAACTGGTGGAACCAAAGGACTAGGGTTCTTAATCGATTCTTA
TCTCTCTAGCTAGCTCTTATATGCATTCCTTTCCTATTAATAGTGCCTGC
ATGTGCTCATATTTTTGTTTCTGTTATTGGTGCATTGACTAGTCATGCTG
TAGTGGAGGAACTGGCTGAGCTTGGTGCCGCTGTGCATACATGCTCTAGG
AATGAAGCAGATCTTAGTGAATGCATACGTGACTGGAAAACTAAAGGCTT
CAAAGTCACCGGTTCAGTGTGCGATGTATCATCTCGAATTGAACGGGAAA
AGCTTATAAACCAAGTCTCCTCTCTGTTCGATGGAAAACTTAACATTCTC
ATAAACAACGTCGGGACGACTATAAGAAAGGCGACTGTGGAGTACACAGC
AGAAGATTTCTCGTTTCTCATGGCTACCAATTTTGAGTCTGCTTACAATC
T
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