CF505260

Overview
NameCF505260
Unique NameCF505260
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length406
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF505260 vs. ExPASy Swiss-Prot
Match: HIBCH_DANRE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Danio rerio GN=hibch PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.989e-11
Identity = 35/96 (36.46%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  121 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLEVVYR-MYWLCHHIHTYKK 402
            VL E++G   ++TLNRP+ LN ++  ++  +   L+KW+KD +  +VI+KG G +AF AGGD++   +   + +   +V +R  Y L + I TY+K
Sbjct:   34 VLFEKVGKAGVITLNRPKALNALTLNMIRHIYPQLKKWDKDSETDIVIIKGAGEKAFCAGGDIRAIAEAGKAGNLLSQVFFREEYILNNTIGTYQK 129          
BLAST of CF505260 vs. ExPASy Swiss-Prot
Match: HIBCH_BOVIN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Bos taurus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.431e-11
Identity = 35/115 (30.43%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   43 FLSFESANLLID*MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH 384
            F S++  N+++  +      +   +V+L E  G   ++TLNRPR LN ++  ++  +   L+KWE+D +  L+I+KG G +AF AGGD++   + RN+    L+ ++R  ++ ++
Sbjct:   13 FNSYKRTNIILQHLKMSNHTDAAAEVLL-ERKGCAGVITLNRPRFLNTLTLGMIRQIYAQLKKWEQDPKTFLIIIKGAGEKAFCAGGDIRALSEARNTNQKMLQDLFREEYILNN 126          
BLAST of CF505260 vs. ExPASy Swiss-Prot
Match: HIBCH_HUMAN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens GN=HIBCH PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.871e-11
Identity = 34/115 (29.57%), Postives = 67/115 (58.26%), Query Frame = 1
Query:   43 FLSFESANLLID*MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGV-GRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH 384
            F +F+  N ++  +      +  E+V+L E+ G   ++TLNRP+ LN ++  ++  +   L+KWE+D +  L+I+KG  G+AF AGGD+++  +   +K     V +R  ++ ++
Sbjct:   13 FNAFKRTNTILHHLRMSKHTDAAEEVLL-EKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNN 126          
The following BLAST results are available for this feature:
BLAST of CF505260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HIBCH_DANRE1.989e-1136.463-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_BOVIN4.431e-1130.433-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_HUMAN9.871e-1129.573-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-755 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-2_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF505260 ID=CF505260; Name=CF505260; organism=Citrus sinensis; type=EST; length=406bp
AAAGTGTTGTTTAACAAAACCTACAAGTTTCTCTCTGTTCTTTTTCTTAG
CTTTGAATCAGCTAACCTACTAATTGACTAAATGGCGCAAGGTGTTGTTA
AGAACCCAGATGAGCAGGTTGTGCTTGGAGAAGAAATAGGCAATGTGAGA
CTGGTCACCTTAAACCGGCCTCGCCAATTGAATGTCATCTCATCTAAAGT
GGTGTCTCTATTGGCAGAATACTTGGAAAAATGGGAAAAAGATGACCAAG
CTAAGCTTGTAATAGTCAAGGGAGTTGGCCGAGCTTTTTCTGCTGGTGGG
GATTTGAAAATGTTTTATGATGGGAGGAACTCAAAGGATTCCTGCCTCGA
AGTGGTCTATAGAATGTATTGGCTTTGCCATCACATTCATACCTATAAGA
AAACCC
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