CF505263

Overview
NameCF505263
Unique NameCF505263
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length431
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF505263 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 8.189e-64
Identity = 113/143 (79.02%), Postives = 125/143 (87.41%), Query Frame = 1
Query:    1 CQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDL 429
            C  Q I + YG GRLE+R+SL  DI +VKPTHVFN+AGVTGRPNVDWCESHK ETIR NV GTLTLADVCR+ GL+++N+ATGCIFEYD  HP GSGIGFKEEDTPNF GSFYSKTKAMVEELLK ++NVCTLRVRMPISSDL
Sbjct:  404 CDKQGIAYEYGKGRLEDRSSLLQDIQSVKPTHVFNSAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDL 546          
BLAST of CF505263 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 1.824e-63
Identity = 111/143 (77.62%), Postives = 126/143 (88.11%), Query Frame = 1
Query:    1 CQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDL 429
            C+ Q I + YG GRLE+RASL ADI ++KP+HVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD+ HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL
Sbjct:  399 CEKQGIPYEYGKGRLEDRASLIADIRSIKPSHVFNAAGLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDL 541          
BLAST of CF505263 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 1.824e-63
Identity = 112/143 (78.32%), Postives = 126/143 (88.11%), Query Frame = 1
Query:    1 CQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDL 429
            C+ Q I + YG GRLE+RASL ADI ++KPTHVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD+ HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL
Sbjct:  402 CEKQGITYEYGKGRLEDRASLVADIRSIKPTHVFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDL 544          
BLAST of CF505263 vs. ExPASy Swiss-Prot
Match: YL780_MIMIV (Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.199e-14
Identity = 48/133 (36.09%), Postives = 71/133 (53.38%), Query Frame = 1
Query:   40 RLENRASLEADIAAVKPTHVFNAAGVTGRPN---VDWCESHK--VETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN-VCTLRVRMPIS 420
            R ++ +++E +I+ +KP  V +  G T  P    +D+ E     VE ++ N+ G L LA +C+   + L    TGCIFE  +        GF E D PNF GS YS  K   + L+  F+N V  LR+RMPI+
Sbjct:   33 RADDESAVEREISEIKPDRVMSFIGRTHGPGYSTIDYLEQSGKLVENVKDNLYGPLCLAFICQKYNIHLTYLGTGCIFEGQNNFSADEK-GFTENDKPNFFGSSYSVVKGFTDRLMHFFDNDVLNLRIRMPIT 164          
The following BLAST results are available for this feature:
BLAST of CF505263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RHM1_ARATH8.189e-6479.02Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
RHM3_ARATH1.824e-6377.62Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM2_ARATH1.824e-6378.32Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
YL780_MIMIV1.199e-1436.09Uncharacterized protein L780 OS=Acanthamoeba polyp... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-758 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-2_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF505263 ID=CF505263; Name=CF505263; organism=Citrus sinensis; type=EST; length=431bp
TGCCAAGCTCAGTCCATTGACTTCACCTACGGCTCCGGCCGCCTCGAGAA
CCGCGCCTCCCTCGAAGCCGACATCGCCGCCGTCAAGCCCACCCACGTCT
TCAACGCGGCCGGGGTGACCGGCAGGCCCAACGTCGACTGGTGCGAATCG
CATAAGGTCGAGACCATACGGACTAATGTCGTCGGCACCCTTACGCTTGC
TGACGTCTGCAGAGACAAAGGTTTGATTCTCATTAATTACGCCACCGGCT
GCATCTTCGAGTACGATTCCGGTCACCCCCTCGGATCCGGCATCGGCTTC
AAGGAGGAGGATACTCCGAATTTTGTCGGATCTTTCTACTCCAAGACTAA
GGCCATGGTGGAAGAGTTGCTCAAGAATTTTGAGAATGTCTGTACTTTGC
GTGTCAGGATGCCGATCTCATCAGATTTATC
back to top