CF508602

Overview
NameCF508602
Unique NameCF508602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF508602 vs. ExPASy Swiss-Prot
Match: TNPO2_MOUSE (Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.979e-23
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    1 LLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPIL 273
            L QC  D   +VRQS+FALLGDL + C +H++  +++F+ I    LN     E +SV NNA WAIGE+ ++   E+ P V  V+  LV I+
Sbjct:  669 LFQCMQDSMPEVRQSSFALLGDLTKACFIHVKPCIAEFMPILGTNLN----PEFISVCNNATWAIGEICMQMGAEMQPYVQMVLNNLVEII 755          

HSP 2 Score: 52.373 bits (124), Expect = 3.979e-23
Identity = 19/34 (55.88%), Postives = 30/34 (88.24%), Query Frame = 2
Query:  392 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWC 493
            K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC
Sbjct:  762 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWC 795          
BLAST of CF508602 vs. ExPASy Swiss-Prot
Match: TNPO1_MOUSE (Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 2.510e-22
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    1 LLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPIL 273
            + QC  D   +VRQS+FALLGDL + C  H++  ++DF+ I    LN     E +SV NNA WAIGE++++   E+ P +  V+  LV I+
Sbjct:  680 MYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN----PEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEII 766          

HSP 2 Score: 52.373 bits (124), Expect = 2.510e-22
Identity = 19/34 (55.88%), Postives = 30/34 (88.24%), Query Frame = 2
Query:  392 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWC 493
            K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC
Sbjct:  773 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWC 806          
BLAST of CF508602 vs. ExPASy Swiss-Prot
Match: TNPO1_HUMAN (Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 2.510e-22
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    1 LLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPIL 273
            + QC  D   +VRQS+FALLGDL + C  H++  ++DF+ I    LN     E +SV NNA WAIGE++++   E+ P +  V+  LV I+
Sbjct:  680 MYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN----PEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEII 766          

HSP 2 Score: 52.373 bits (124), Expect = 2.510e-22
Identity = 19/34 (55.88%), Postives = 30/34 (88.24%), Query Frame = 2
Query:  392 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWC 493
            K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC
Sbjct:  773 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWC 806          
BLAST of CF508602 vs. ExPASy Swiss-Prot
Match: TNPO1_BOVIN (Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 2.510e-22
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    1 LLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPIL 273
            + QC  D   +VRQS+FALLGDL + C  H++  ++DF+ I    LN     E +SV NNA WAIGE++++   E+ P +  V+  LV I+
Sbjct:  680 MYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN----PEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEII 766          

HSP 2 Score: 52.373 bits (124), Expect = 2.510e-22
Identity = 19/34 (55.88%), Postives = 30/34 (88.24%), Query Frame = 2
Query:  392 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWC 493
            K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC
Sbjct:  773 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWC 806          
BLAST of CF508602 vs. ExPASy Swiss-Prot
Match: TNPO2_HUMAN (Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 9.972e-21
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    1 LLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPIL 273
            L QC  D   +VRQS+FALLGDL + C +H++  +++F+ I    LN     E +SV NNA WAIGE+ ++   E+ P V  V+  LV I+
Sbjct:  669 LFQCMQDSMPEVRQSSFALLGDLTKACFIHVKPCIAEFMPILGTNLN----PEFISVCNNATWAIGEICMQMGAEMQPYVQMVLNNLVEII 755          

HSP 2 Score: 44.2838 bits (103), Expect = 9.972e-21
Identity = 19/44 (43.18%), Postives = 30/44 (68.18%), Query Frame = 2
Query:  392 KSLIENS----------AITLGRLAWVCPELVSPHMEHFMQPWC 493
            K+L+EN+          AIT+GRL +VCP+ V+P ++ F++PWC
Sbjct:  762 KTLLENTGRLTSPSAIPAITIGRLGYVCPQEVAPMLQQFIRPWC 805          
BLAST of CF508602 vs. ExPASy Swiss-Prot
Match: IMB2_SCHPO (Importin subunit beta-2 OS=Schizosaccharomyces pombe GN=kap104 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 8.396e-15
Identity = 31/89 (34.83%), Postives = 49/89 (55.06%), Query Frame = 1
Query:   10 CCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILK 276
            C  D+  +VRQSA+ALLGD+   C   ++      L     Q+  P L   VS +NNA W+ GE+A++  +++   V  ++  L+ ILK
Sbjct:  697 CAKDEVPEVRQSAYALLGDMCMYCFDQIRPYCDALLVDMLPQMQLPLLH--VSASNNAIWSAGEMALQLGKDMQQWVKPLLERLICILK 783          

HSP 2 Score: 46.9802 bits (110), Expect = 8.396e-15
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 2
Query:  368 IHSKQELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPW 490
            I   ++ N +++EN AIT+GRL    PELV+PH+E F QPW
Sbjct:  781 ILKSKKSNTTVLENVAITIGRLGVYNPELVAPHLELFYQPW 821          
BLAST of CF508602 vs. ExPASy Swiss-Prot
Match: TNPO_DICDI (Transportin OS=Dictyostelium discoideum GN=tnpo PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.749e-13
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 1
Query:    1 LLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTV 249
            LLQC     SDV QS+FALLGD+++ C +H +  + D+L+I    L      E +SV NNA WAIGE+A++   E+ P V+ +
Sbjct:  708 LLQCMNLRGSDVLQSSFALLGDMSKFCLIHFKQYIPDYLNILTNNL----YPEYLSVCNNASWAIGEIAIRMPDEVKPFVVAI 786          
The following BLAST results are available for this feature:
BLAST of CF508602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TNPO2_MOUSE3.979e-2342.86Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1[more]
TNPO1_MOUSE2.510e-2241.76Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2[more]
TNPO1_HUMAN2.510e-2241.76Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2[more]
TNPO1_BOVIN2.510e-2241.76Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2[more]
TNPO2_HUMAN9.972e-2142.86Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3[more]
IMB2_SCHPO8.396e-1534.83Importin subunit beta-2 OS=Schizosaccharomyces pom... [more]
TNPO_DICDI9.749e-1343.37Transportin OS=Dictyostelium discoideum GN=tnpo PE... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_124000-105 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-69_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF508602 ID=CF508602; Name=CF508602; organism=Citrus sinensis; type=EST; length=497bp
CTTCTGCAATGTTGCATGGATGATGCTTCGGATGTCCGACAAAGTGCCTT
TGCCCTTCTTGGGGACCTTGCAAGAGTATGTCCTGTTCATTTGCAAGCTC
GGTTGTCTGATTTTCTTGATATTGCAGCCAAGCAACTGAACACTCCTAAG
CTGAAAGAAACTGTGTCAGTTGCAAATAATGCTTGTTGGGCTATTGGAGA
ATTAGCTGTTAAGGCTCGTCAAGAAATTTCTCCAATTGTTATGACAGTTG
TCTTGTGCTTGGTCCCAATCCTTAAACACTCTGAGGTGATCATTTCTCGA
AACTTTCTTAGCTTTTGTTGCTGTGTGTTTACGTTATCTTAGTGTATGTG
ATTTCTATGAAACATCAATTCATTCTAAGCAGGAGTTGAACAAGTCACTC
ATAGAAAATAGTGCAATTACACTTGGAAGGCTTGCGTGGGTTTGCCCAGA
ACTTGTGTCGCCCCACATGGAACATTTCATGCAACCTTGGTGCATTG
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