CF508602
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF508602 vs. ExPASy Swiss-Prot
Match: TNPO2_MOUSE (Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 3.979e-23 Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1 Query: 1 LLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPIL 273 L QC D +VRQS+FALLGDL + C +H++ +++F+ I LN E +SV NNA WAIGE+ ++ E+ P V V+ LV I+ Sbjct: 669 LFQCMQDSMPEVRQSSFALLGDLTKACFIHVKPCIAEFMPILGTNLN----PEFISVCNNATWAIGEICMQMGAEMQPYVQMVLNNLVEII 755 HSP 2 Score: 52.373 bits (124), Expect = 3.979e-23 Identity = 19/34 (55.88%), Postives = 30/34 (88.24%), Query Frame = 2 Query: 392 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWC 493 K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC Sbjct: 762 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWC 795
BLAST of CF508602 vs. ExPASy Swiss-Prot
Match: TNPO1_MOUSE (Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 2.510e-22 Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 1 Query: 1 LLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPIL 273 + QC D +VRQS+FALLGDL + C H++ ++DF+ I LN E +SV NNA WAIGE++++ E+ P + V+ LV I+ Sbjct: 680 MYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN----PEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEII 766 HSP 2 Score: 52.373 bits (124), Expect = 2.510e-22 Identity = 19/34 (55.88%), Postives = 30/34 (88.24%), Query Frame = 2 Query: 392 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWC 493 K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC Sbjct: 773 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWC 806
BLAST of CF508602 vs. ExPASy Swiss-Prot
Match: TNPO1_HUMAN (Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 2.510e-22 Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 1 Query: 1 LLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPIL 273 + QC D +VRQS+FALLGDL + C H++ ++DF+ I LN E +SV NNA WAIGE++++ E+ P + V+ LV I+ Sbjct: 680 MYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN----PEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEII 766 HSP 2 Score: 52.373 bits (124), Expect = 2.510e-22 Identity = 19/34 (55.88%), Postives = 30/34 (88.24%), Query Frame = 2 Query: 392 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWC 493 K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC Sbjct: 773 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWC 806
BLAST of CF508602 vs. ExPASy Swiss-Prot
Match: TNPO1_BOVIN (Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 2.510e-22 Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 1 Query: 1 LLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPIL 273 + QC D +VRQS+FALLGDL + C H++ ++DF+ I LN E +SV NNA WAIGE++++ E+ P + V+ LV I+ Sbjct: 680 MYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN----PEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEII 766 HSP 2 Score: 52.373 bits (124), Expect = 2.510e-22 Identity = 19/34 (55.88%), Postives = 30/34 (88.24%), Query Frame = 2 Query: 392 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWC 493 K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC Sbjct: 773 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWC 806
BLAST of CF508602 vs. ExPASy Swiss-Prot
Match: TNPO2_HUMAN (Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3) HSP 1 Score: 76.2554 bits (186), Expect = 9.972e-21 Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1 Query: 1 LLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPIL 273 L QC D +VRQS+FALLGDL + C +H++ +++F+ I LN E +SV NNA WAIGE+ ++ E+ P V V+ LV I+ Sbjct: 669 LFQCMQDSMPEVRQSSFALLGDLTKACFIHVKPCIAEFMPILGTNLN----PEFISVCNNATWAIGEICMQMGAEMQPYVQMVLNNLVEII 755 HSP 2 Score: 44.2838 bits (103), Expect = 9.972e-21 Identity = 19/44 (43.18%), Postives = 30/44 (68.18%), Query Frame = 2 Query: 392 KSLIENS----------AITLGRLAWVCPELVSPHMEHFMQPWC 493 K+L+EN+ AIT+GRL +VCP+ V+P ++ F++PWC Sbjct: 762 KTLLENTGRLTSPSAIPAITIGRLGYVCPQEVAPMLQQFIRPWC 805
BLAST of CF508602 vs. ExPASy Swiss-Prot
Match: IMB2_SCHPO (Importin subunit beta-2 OS=Schizosaccharomyces pombe GN=kap104 PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 8.396e-15 Identity = 31/89 (34.83%), Postives = 49/89 (55.06%), Query Frame = 1 Query: 10 CCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILK 276 C D+ +VRQSA+ALLGD+ C ++ L Q+ P L VS +NNA W+ GE+A++ +++ V ++ L+ ILK Sbjct: 697 CAKDEVPEVRQSAYALLGDMCMYCFDQIRPYCDALLVDMLPQMQLPLLH--VSASNNAIWSAGEMALQLGKDMQQWVKPLLERLICILK 783 HSP 2 Score: 46.9802 bits (110), Expect = 8.396e-15 Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 2 Query: 368 IHSKQELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPW 490 I ++ N +++EN AIT+GRL PELV+PH+E F QPW Sbjct: 781 ILKSKKSNTTVLENVAITIGRLGVYNPELVAPHLELFYQPW 821
BLAST of CF508602 vs. ExPASy Swiss-Prot
Match: TNPO_DICDI (Transportin OS=Dictyostelium discoideum GN=tnpo PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 9.749e-13 Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 1 Query: 1 LLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTV 249 LLQC SDV QS+FALLGD+++ C +H + + D+L+I L E +SV NNA WAIGE+A++ E+ P V+ + Sbjct: 708 LLQCMNLRGSDVLQSSFALLGDMSKFCLIHFKQYIPDYLNILTNNL----YPEYLSVCNNASWAIGEIAIRMPDEVKPFVVAI 786 The following BLAST results are available for this feature:
BLAST of CF508602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF508602 ID=CF508602; Name=CF508602; organism=Citrus sinensis; type=EST; length=497bpback to top |