CF508609

Overview
NameCF508609
Unique NameCF508609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF508609 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 3.098e-82
Identity = 147/160 (91.88%), Postives = 154/160 (96.25%), Query Frame = 3
Query:    3 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHF 482
            MSRGSG GYDRHITIFSPEGRLFQVEYAFKAVKA  ITSIGVRGKDSVCVVTQKKVPDKLLDQT V+HLFPITKYLGLLATG TADAR+LV QARNEAAE+RFK+GYEMPVDVLS+WIADKSQVYTQHAYMRPLGVVAM+LGIDEEKGPQL+KCDPAGHF
Sbjct:    1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPVDVLSKWIADKSQVYTQHAYMRPLGVVAMILGIDEEKGPQLFKCDPAGHF 160          
BLAST of CF508609 vs. ExPASy Swiss-Prot
Match: PSA6B_ARATH (Proteasome subunit alpha type-6-B OS=Arabidopsis thaliana GN=PAA2 PE=1 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 3.787e-80
Identity = 142/160 (88.75%), Postives = 153/160 (95.62%), Query Frame = 3
Query:    3 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHF 482
            MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKA  ITSIGVRGKDSVCVVTQKKVPDKLLDQ+ V+HLFP+TKYLGLLATG TAD+RSLV QARNEAAE+RF++GYEMP D+L++WIADKSQVYTQHAYMRPLGVVAMVLGIDEE+GP LYKCDPAGHF
Sbjct:    1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVSHLFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQHAYMRPLGVVAMVLGIDEERGPLLYKCDPAGHF 160          
BLAST of CF508609 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 293.508 bits (750), Expect = 3.206e-79
Identity = 140/160 (87.50%), Postives = 151/160 (94.38%), Query Frame = 3
Query:    3 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHF 482
            MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVK   ITSIGVRGKDSVCVVTQKKVPDKLLDQ+ VTHLFPITKY+GL+ATG TADARSLV QARN+AAE+RF +GYEMPVD+L++WIADKSQVYTQHAYMRPLGVVAMV+G+DEE GP LYKCDPAGHF
Sbjct:    1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTHLFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAYMRPLGVVAMVMGVDEENGPLLYKCDPAGHF 160          
BLAST of CF508609 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2)

HSP 1 Score: 292.352 bits (747), Expect = 7.142e-79
Identity = 141/160 (88.12%), Postives = 150/160 (93.75%), Query Frame = 3
Query:    3 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHF 482
            MSRGSG GY+RHITIFSPEGRLFQVEYAFKAVKA  ITSIGVRGKDS+CVVT KKVPDKLLD T VTHLFPITKYLGLLATG TADAR+LV QARNEAAE+RF +GYEMPVDVL++WIADKSQVYTQHAYMRPLGVVAMVLGID+E GPQLYKCDPAGH+
Sbjct:    1 MSRGSGGGYNRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTHKKVPDKLLDNTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDEYGPQLYKCDPAGHY 160          
BLAST of CF508609 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 1.218e-78
Identity = 140/160 (87.50%), Postives = 152/160 (95.00%), Query Frame = 3
Query:    3 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHF 482
            MSRG+GAGYDRHITIFSPEGRL+QVEYAFKAVK+  +TSIGVRGKDSVCVVTQKKVPDKLLD T VTHLFPITKY+GLLATG TADARSLV+QARNEAAE+RFK+GYEMPVDVL++WIADK+QVYTQHAYMRPLGVVAMVLG DEEK  QL+KCDPAGHF
Sbjct:    1 MSRGTGAGYDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHF 160          
BLAST of CF508609 vs. ExPASy Swiss-Prot
Match: PSA6_RAT (Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 3.120e-58
Identity = 106/160 (66.25%), Postives = 133/160 (83.12%), Query Frame = 3
Query:    3 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHF 482
            MSRGS AG+DRHITIFSPEGRL+QVEYAFKA+    +TS+ VRGKD   +VTQKKVPDKLLD + VTHLF IT+ +G + TG TAD+RS V +AR EAA +++K+GYE+PVD+L + IAD SQVYTQ+A MRPLG   +++GIDEE+GPQ+YKCDPAG++
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYY 160          
BLAST of CF508609 vs. ExPASy Swiss-Prot
Match: PSA6_MOUSE (Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 3.120e-58
Identity = 106/160 (66.25%), Postives = 133/160 (83.12%), Query Frame = 3
Query:    3 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHF 482
            MSRGS AG+DRHITIFSPEGRL+QVEYAFKA+    +TS+ VRGKD   +VTQKKVPDKLLD + VTHLF IT+ +G + TG TAD+RS V +AR EAA +++K+GYE+PVD+L + IAD SQVYTQ+A MRPLG   +++GIDEE+GPQ+YKCDPAG++
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYY 160          
BLAST of CF508609 vs. ExPASy Swiss-Prot
Match: PSA6_HUMAN (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 3.120e-58
Identity = 106/160 (66.25%), Postives = 133/160 (83.12%), Query Frame = 3
Query:    3 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHF 482
            MSRGS AG+DRHITIFSPEGRL+QVEYAFKA+    +TS+ VRGKD   +VTQKKVPDKLLD + VTHLF IT+ +G + TG TAD+RS V +AR EAA +++K+GYE+PVD+L + IAD SQVYTQ+A MRPLG   +++GIDEE+GPQ+YKCDPAG++
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYY 160          
BLAST of CF508609 vs. ExPASy Swiss-Prot
Match: PSA6_BOVIN (Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 3.120e-58
Identity = 106/160 (66.25%), Postives = 133/160 (83.12%), Query Frame = 3
Query:    3 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHF 482
            MSRGS AG+DRHITIFSPEGRL+QVEYAFKA+    +TS+ VRGKD   +VTQKKVPDKLLD + VTHLF IT+ +G + TG TAD+RS V +AR EAA +++K+GYE+PVD+L + IAD SQVYTQ+A MRPLG   +++GIDEE+GPQ+YKCDPAG++
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYY 160          
BLAST of CF508609 vs. ExPASy Swiss-Prot
Match: PSA6_YEAST (Proteasome component C7-alpha OS=Saccharomyces cerevisiae GN=SCL1 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.833e-50
Identity = 92/156 (58.97%), Postives = 122/156 (78.21%), Query Frame = 3
Query:   15 SGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHF 482
            S AGYDRHITIFSPEGRL+QVEYAFKA   T I S+ VRGKD   V++QKKVPDKLLD T V+++F I++ +G++  G   DAR+   +A+ EAAE+R+K+GY+MP DVL++ +A+ SQ+YTQ AYMRPLGV+   + +DEE GP +YK DPAG++
Sbjct:    8 SAAGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYY 163          
The following BLAST results are available for this feature:
BLAST of CF508609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA6_TOBAC3.098e-8291.88Proteasome subunit alpha type-6 OS=Nicotiana tabac... [more]
PSA6B_ARATH3.787e-8088.75Proteasome subunit alpha type-6-B OS=Arabidopsis t... [more]
PSA6A_ARATH3.206e-7987.50Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSA6_SOYBN7.142e-7988.13Proteasome subunit alpha type-6 OS=Glycine max GN=... [more]
PSA6_ORYSJ1.218e-7887.50Proteasome subunit alpha type-6 OS=Oryza sativa su... [more]
PSA6_RAT3.120e-5866.25Proteasome subunit alpha type-6 OS=Rattus norvegic... [more]
PSA6_MOUSE3.120e-5866.25Proteasome subunit alpha type-6 OS=Mus musculus GN... [more]
PSA6_HUMAN3.120e-5866.25Proteasome subunit alpha type-6 OS=Homo sapiens GN... [more]
PSA6_BOVIN3.120e-5866.25Proteasome subunit alpha type-6 OS=Bos taurus GN=P... [more]
PSA6_YEAST1.833e-5058.97Proteasome component C7-alpha OS=Saccharomyces cer... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_124000-112 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-69_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF508609 ID=CF508609; Name=CF508609; organism=Citrus sinensis; type=EST; length=484bp
GAATGAGTAGAGGAAGCGGAGCCGGCTACGATCGCCACATCACCATCTTC
TCTCCCGAGGGTCGTCTCTTCCAAGTTGAGTATGCGTTTAAGGCTGTAAA
GGCCACTGCCATCACTTCCATTGGTGTTCGCGGCAAGGACTCTGTCTGTG
TTGTCACTCAGAAGAAGGTCCCTGACAAGCTTTTGGATCAGACTTGTGTC
ACCCATCTTTTCCCTATTACCAAGTACCTTGGATTGTTGGCCACCGGCAA
CACAGCTGATGCTAGGTCCTTGGTTCACCAAGCAAGGAATGAAGCTGCTG
AATATCGGTTCAAATTTGGATATGAAATGCCAGTAGATGTTTTGTCCAGA
TGGATTGCAGACAAGTCACAGGTTTATACCCAGCATGCTTATATGAGACC
TCTTGGAGTTGTTGCTATGGTTTTGGGTATCGATGAAGAGAAAGGGCCTC
AACTTTACAAATGTGATCCTGCTGGACATTTTTT
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