CF508724

Overview
NameCF508724
Unique NameCF508724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF508724 vs. ExPASy Swiss-Prot
Match: RPG1_ARATH (Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.623e-28
Identity = 67/165 (40.61%), Postives = 95/165 (57.58%), Query Frame = 2 
Query:  110 FLFGVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLIFLLFA--PKKEKAKIFGLFMLGXXXXXXXXXXXXXXFHGN-ARKIFCGFAATIFSIIMYASPLSIMRMGIKTKSGEFMPFFLAL 595
            F+ GV GN  +  LF AP  TF RI ++KS E+FS +PYV T++NC+L  +YGLP V K++ILVSTING G  IE+ YV ++L++    K  +  I G   L                 G+  ++ F G    +F+I MY +P   +   +KTKS E+MPF L+L
Sbjct:    9 FIIGVIGNVISFGLFAAPAKTFWRIFKKKSVEEFSYVPYVATVMNCMLWVFYGLPVVHKDSILVSTINGVGLVIELFYVGVYLMYCGHKKNHRRNILGFLALEVILVVAIILITLFALKGDFVKQTFVGVICDVFNIAMYGAPSLAIIKVVKTKSVEYMPFLLSL 173
The following BLAST results are available for this feature:
BLAST of CF508724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RPG1_ARATH5.623e-2840.61Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_124000-227 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-70_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF508724 ID=CF508724; Name=CF508724; organism=Citrus sinensis; type=EST; length=598bp
AGAAACTCGTGCTTGTTTTCATTTTCTTGAGTGCTTTCCTCATCTGAGTT
CCTTTCCCTTCTTTCACTGAAGATAAGATTCGAAGAAGAAGATAATGGAT
ATTGCACATTTCTTGTTCGGTGTTTTTGGAAATGCTACTGCTTTATTTCT
CTTCTTGGCTCCAACAATCACATTTAGGAGGATTGTAAGAAGGAAATCCA
CAGAGCAATTCTCTGGAATTCCTTATGTGATGACCTTGCTTAATTGTCTC
CTCTCTGCCTGGTATGGTCTCCCTTTTGTGTCGAAGAACAACATTTTGGT
ATCAACAATCAATGGAACTGGTTCAGCAATTGAGATCATATATGTTTTGA
TCTTCCTACTCTTTGCGCCAAAGAAGGAGAAAGCGAAAATCTTTGGGCTT
TTCATGCTTGGTCTCACAGTCTTCGCTGCTGTTGCCTTGGTGTCTCTCTT
AGCCTTTCATGGCAACGCTAGAAAGATTTTCTGTGGCTTTGCTGCTACCA
TTTTCTCTATTATCATGTATGCCTCACCTCTTTCTATCATGAGAATGGGG
ATTAAAACAAAGAGTGGTGAGTTCATGCCATTTTTCTTGGCACTATTT
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