CF508753

Overview
NameCF508753
Unique NameCF508753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF508753 vs. ExPASy Swiss-Prot
Match: ADF_VITVI (Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.029e-45
Identity = 89/115 (77.39%), Postives = 98/115 (85.22%), Query Frame = 3
Query:  138 MSFRGLSRPNATSGMGVADHSKNAFTELQRKKGHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWAPSTSRIRAKMLYATSKD 482
            MSFRGL   NA+SGMGVADHSKN F EL+RKK HRYVIFKID          TGGPAES+++FAAALPENDCRYAVYDFD+VTSENCQKSKIFFIAW+P +SRIRAKMLYATSK+
Sbjct:    1 MSFRGL---NASSGMGVADHSKNTFLELKRKKVHRYVIFKIDEKKKEVVVEKTGGPAESFDEFAAALPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPDSSRIRAKMLYATSKE 112          
BLAST of CF508753 vs. ExPASy Swiss-Prot
Match: ADF6_ARATH (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 3.955e-45
Identity = 86/115 (74.78%), Postives = 94/115 (81.74%), Query Frame = 3
Query:  138 MSFRGLSRPNATSGMGVADHSKNAFTELQRKKGHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWAPSTSRIRAKMLYATSKD 482
            MSFRGLSRPNA SGMGVAD SK  F ELQRKK HRYV+FKID          TG P ESY+DF A+LP+NDCRYAVYDFD+VTSENCQKSKIFF AW+PSTS IRAK+LY+TSKD
Sbjct:    1 MSFRGLSRPNAISGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKD 115          
BLAST of CF508753 vs. ExPASy Swiss-Prot
Match: ADF11_ORYSJ (Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.324e-37
Identity = 73/109 (66.97%), Postives = 84/109 (77.06%), Query Frame = 3
Query:  156 SRPNATSGMGVADHSKNAFTELQRKKGHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWAPSTSRIRAKMLYATSKD 482
            SR NA+SG+GVA   K  F ELQRKK HRYVIFKID          TG   ES++DF  +LPE+DCRYA+YDFD+VT ENCQKSKIFF+AW+PS SRIRAKMLYATSK+
Sbjct:    6 SRANASSGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSLPESDCRYAIYDFDFVTEENCQKSKIFFVAWSPSVSRIRAKMLYATSKE 114          
BLAST of CF508753 vs. ExPASy Swiss-Prot
Match: ADF2_ORYSJ (Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.477e-36
Identity = 73/109 (66.97%), Postives = 83/109 (76.15%), Query Frame = 3
Query:  156 SRPNATSGMGVADHSKNAFTELQRKKGHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWAPSTSRIRAKMLYATSKD 482
            S  NA+SGMGVA   ++ F ELQ KK  RYVIFKI+          TG   ESY+DF A+LPENDCRYA+YDFD+VT EN QKSKIFFIAW+PSTSRIRAKMLY+TSKD
Sbjct:    6 SHSNASSGMGVAPDIRDTFLELQMKKAFRYVIFKIEEKQKQVVVEKTGATTESYDDFLASLPENDCRYALYDFDFVTGENVQKSKIFFIAWSPSTSRIRAKMLYSTSKD 114          
BLAST of CF508753 vs. ExPASy Swiss-Prot
Match: ADF1_PETHY (Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.194e-33
Identity = 64/106 (60.38%), Postives = 81/106 (76.42%), Query Frame = 3
Query:  165 NATSGMGVADHSKNAFTELQRKKGHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWAPSTSRIRAKMLYATSKD 482
            NA SGM V D  K  F EL+ K+ HR++++KI+           G P ESYEDFAA+LPEN+CRYAVYDFD+VT+ENCQKS+IFFIAW P T+R+R+KM+YA+SKD
Sbjct:    3 NAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKIGEPTESYEDFAASLPENECRYAVYDFDFVTAENCQKSRIFFIAWCPDTARVRSKMIYASSKD 108          
BLAST of CF508753 vs. ExPASy Swiss-Prot
Match: ADF10_ARATH (Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 8.555e-32
Identity = 60/106 (56.60%), Postives = 79/106 (74.53%), Query Frame = 3
Query:  165 NATSGMGVADHSKNAFTELQRKKGHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWAPSTSRIRAKMLYATSKD 482
            N+ SGM V+D  K  F EL+ K+ +R+++FKID           G P E+YEDF  ++PE++CRYAVYD+D+ T ENCQKSKIFFIAW+P TSR+R+KMLYA+SKD
Sbjct:    3 NSASGMHVSDECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSIPEDECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKD 108          
BLAST of CF508753 vs. ExPASy Swiss-Prot
Match: ADF1_ORYSJ (Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica GN=ADF1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.489e-31
Identity = 61/106 (57.55%), Postives = 77/106 (72.64%), Query Frame = 3
Query:  165 NATSGMGVADHSKNAFTELQRKKGHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWAPSTSRIRAKMLYATSKD 482
            N+ SGM V D  K  F EL+ K+  R+++FKI+           G P ESY+DF A LP ++CRYAV+DFD+VT ENCQKSKIFFI+WAP TSR+R+KMLYA+SKD
Sbjct:    3 NSASGMAVCDECKLKFLELKAKRSFRFIVFKINEKVQQVVVDRLGQPGESYDDFTACLPADECRYAVFDFDFVTDENCQKSKIFFISWAPDTSRVRSKMLYASSKD 108          
BLAST of CF508753 vs. ExPASy Swiss-Prot
Match: ADF7_ORYSJ (Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica GN=ADF7 PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 3.251e-31
Identity = 60/106 (56.60%), Postives = 79/106 (74.53%), Query Frame = 3
Query:  165 NATSGMGVADHSKNAFTELQRKKGHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWAPSTSRIRAKMLYATSKD 482
            NA SGM V D  K  F EL+ K+ +R++I+KID           G P  +Y+DFAA+LP N+CRYA++D+D+VT ENCQKSKIFFIAW+P TSR+R+KM+YA+SKD
Sbjct:    3 NAASGMAVDDECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASLPANECRYAIFDYDFVTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKD 108          
BLAST of CF508753 vs. ExPASy Swiss-Prot
Match: ADF8_ARATH (Actin-depolymerizing factor 8 OS=Arabidopsis thaliana GN=ADF8 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 7.242e-31
Identity = 58/106 (54.72%), Postives = 79/106 (74.53%), Query Frame = 3
Query:  165 NATSGMGVADHSKNAFTELQRKKGHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWAPSTSRIRAKMLYATSKD 482
            N+ SGM V D  K  F EL+ K+ +R+++FKID           G P E+Y+DF +++P+++CRYAVYDFD+ T +NCQKSKIFFIAW+P TSR+R+KMLYA+SKD
Sbjct:    3 NSASGMHVNDECKIKFLELKAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSIPDDECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKD 108          
BLAST of CF508753 vs. ExPASy Swiss-Prot
Match: ADF5_ORYSJ (Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica GN=ADF5 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.613e-30
Identity = 61/104 (58.65%), Postives = 76/104 (73.08%), Query Frame = 3
Query:  168 ATSGMGVADHSKNAFTELQRKKGHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWAPSTSRIRAKMLYATSK 479
            AT GM V +  +  F E++ KK HR+V++KID           GGP E YE+  AALP +DCRYAV+DFD+VT +NCQKSKIFFIAW+P+ SRIRAK+LYATSK
Sbjct:    8 ATEGMNVKEECQRWFMEMKWKKVHRFVVYKIDERSRAVLVDKVGGPGEGYEELVAALPTDDCRYAVFDFDFVTVDNCQKSKIFFIAWSPTASRIRAKILYATSK 111          
The following BLAST results are available for this feature:
BLAST of CF508753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ADF_VITVI3.029e-4577.39Actin-depolymerizing factor OS=Vitis vinifera PE=2... [more]
ADF6_ARATH3.955e-4574.78Actin-depolymerizing factor 6 OS=Arabidopsis thali... [more]
ADF11_ORYSJ2.324e-3766.97Actin-depolymerizing factor 11 OS=Oryza sativa sub... [more]
ADF2_ORYSJ7.477e-3666.97Actin-depolymerizing factor 2 OS=Oryza sativa subs... [more]
ADF1_PETHY1.194e-3360.38Actin-depolymerizing factor 1 OS=Petunia hybrida G... [more]
ADF10_ARATH8.555e-3256.60Actin-depolymerizing factor 10 OS=Arabidopsis thal... [more]
ADF1_ORYSJ2.489e-3157.55Actin-depolymerizing factor 1 OS=Oryza sativa subs... [more]
ADF7_ORYSJ3.251e-3156.60Actin-depolymerizing factor 7 OS=Oryza sativa subs... [more]
ADF8_ARATH7.242e-3154.72Actin-depolymerizing factor 8 OS=Arabidopsis thali... [more]
ADF5_ORYSJ1.613e-3058.65Actin-depolymerizing factor 5 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_124000-256 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-70_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF508753 ID=CF508753; Name=CF508753; organism=Citrus sinensis; type=EST; length=484bp
CTTCTTTCTTTTTTTTAATTATTACGTATAAAACTAGGCCACTTCTTTTA
GTTTTATTCTGAGCACAATACATTTTCGCTCTCTTTCATTGTTTATTTAC
TTGCTCTGGTGATCTGCGTTCTGTTGCTGCCGCCGCCATGTCTTTCAGAG
GACTAAGTCGACCAAATGCCACTTCTGGCATGGGCGTTGCTGATCACAGC
AAAAATGCATTCACGGAATTGCAAAGGAAGAAGGGTCACCGTTATGTGAT
TTTTAAGATTGATGAGAAGAAAAAGGAGGTTGTGGTTGAGAAGACTGGTG
GCCCCGCTGAGAGCTACGAGGATTTCGCTGCTGCTTTGCCTGAGAATGAT
TGTCGATATGCTGTATATGACTTTGACTATGTGACTTCTGAGAATTGTCA
GAAGAGCAAGATATTCTTCATTGCATGGGCCCCTTCAACCTCTAGAATCC
GTGCCAAGATGCTGTACGCCACATCTAAAGACAG
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