CF509531

Overview
NameCF509531
Unique NameCF509531
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length443
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509531 vs. ExPASy Swiss-Prot
Match: AB3G_ARATH (ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 2.656e-52
Identity = 99/119 (83.19%), Postives = 112/119 (94.12%), Query Frame = 3
Query:    3 DFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSV 359
            DFDRIIAMCK+WQDD+GDFS+VNMDTAVAIRTLEATY+SSADA +VE MI++LTE+EG  LKSKGKA +ATRVAVLTWRSLL+MSREWKYYWLRLIL MILTL +GT++SGLGHSLSSV
Sbjct:  371 DFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEATYKSSADADSVEAMIIKLTEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYWLRLILYMILTLSIGTLYSGLGHSLSSV 489          
BLAST of CF509531 vs. ExPASy Swiss-Prot
Match: AB11G_ARATH (ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.395e-14
Identity = 45/151 (29.80%), Postives = 82/151 (54.30%), Query Frame = 3
Query:    3 DFDRIIAMCKSWQD---DHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKG-KASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKE 443
            DFD++ A  K       +  D     + TA AIR L   Y +S      +  +  +++ +G  L S G +AS   +   LT RS + MSR++ YYWLRL++ +++T+C+GT++  +G S S+++ R +       F + ++I G P+ +++
Sbjct:  308 DFDKVRATLKGSMKLRFEASDDPLEKITTAEAIRLLVDYYHTSDYYYTAKAKVEEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRLLIYILVTVCIGTIYLNVGTSYSAILARGSCASFVFGFVTFMSIGGFPSFVED 458          
BLAST of CF509531 vs. ExPASy Swiss-Prot
Match: AB12G_ARATH (ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.413e-13
Identity = 46/154 (29.87%), Postives = 79/154 (51.30%), Query Frame = 3
Query:    3 DFDRIIAMCKSWQDDHGDFSS----VNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSAT---RVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKE 443
            DFD + A  K  Q      ++    +N+ T+     L   Y+ S  A + ++ I  L   EG       K S AT   ++  LT RS + M R+  YYW R+++ ++++ CVGT+F  +GHS +S++ RV+       F + ++I G P+ ++E
Sbjct:  284 DFDTVTATLKGSQRIRETPATSDPLMNLATSEIKARLVENYRRSVYAKSAKSRIRELASIEGHHGMEVRKGSEATWFKQLRTLTKRSFVNMCRDIGYYWSRIVIYIVVSFCVGTIFYDVGHSYTSILARVSCGGFITGFMTFMSIGGFPSFIEE 437          
BLAST of CF509531 vs. ExPASy Swiss-Prot
Match: AB15G_ARATH (ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.021e-11
Identity = 46/154 (29.87%), Postives = 83/154 (53.90%), Query Frame = 3
Query:    3 DFDRIIAMCKSWQDDHGDFSS----VNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSAT---RVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKE 443
            DFD + A  K  Q      ++    +N+ T+V    L   Y+ S  A + ++ I  L+  EG  ++ + K S AT   ++  LT RS + M R+  YYW R+I  +++++ VGT+F  +G+S +S++ RV+       F + ++I G P+ ++E
Sbjct:  284 DFDTVTATLKGSQRIQETPATSDPLMNLATSVIKARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIR-KGSEATWWKQLRTLTARSFINMCRDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTFMSIGGFPSFLEE 436          
The following BLAST results are available for this feature:
BLAST of CF509531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AB3G_ARATH2.656e-5283.19ABC transporter G family member 3 OS=Arabidopsis t... [more]
AB11G_ARATH6.395e-1429.80ABC transporter G family member 11 OS=Arabidopsis ... [more]
AB12G_ARATH5.413e-1329.87ABC transporter G family member 12 OS=Arabidopsis ... [more]
AB15G_ARATH1.021e-1129.87ABC transporter G family member 15 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-039 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509531 ID=CF509531; Name=CF509531; organism=Citrus sinensis; type=EST; length=443bp
CGGATTTTGACCGGATCATAGCAATGTGCAAAAGTTGGCAGGATGACCAT
GGTGATTTTTCATCAGTGAATATGGATACTGCGGTTGCTATACGCACTCT
TGAGGCAACTTATCAATCATCAGCTGATGCTGCTGCTGTTGAAACTATGA
TACTGAGGCTTACTGAAAAGGAAGGTCCATTTCTGAAAAGCAAGGGAAAG
GCTAGCAGTGCTACACGAGTTGCAGTACTGACATGGAGGTCACTGTTAAT
TATGTCGAGGGAATGGAAATACTACTGGCTTCGTCTTATTCTTTGCATGA
TTCTTACGCTCTGTGTTGGTACCGTGTTTTCGGGCTTAGGACATTCCTTG
TCTTCAGTTGTGACAAGAGTTGCAGCAATATTTGTATTTGTATCATTTAA
TTCACTTTTGAACATCGCTGGAGTACCTGCACTTATGAAAGAA
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