CF509533

Overview
NameCF509533
Unique NameCF509533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length402
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13205 contig Csv1_Contig13205:600..1001. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODPA2_ARATH (Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=IAR4 PE=1 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 4.676e-69
Identity = 121/129 (93.80%), Postives = 127/129 (98.45%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 402
            AFAQKY+KDE VTFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTA WR+AKSP+Y+KRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGP+ILEMDTYRYHGHSMSDPGSTYRTRDEI
Sbjct:  182 AFAQKYNKDEAVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTATWRSAKSPAYFKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEI 310          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODPA1_ARATH (Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At1g59900 PE=1 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 1.777e-68
Identity = 120/129 (93.02%), Postives = 126/129 (97.67%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 402
            AFAQKY+K+E VTFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDA AVKQACKFAK+HAL+ GP+ILEMDTYRYHGHSMSDPGSTYRTRDEI
Sbjct:  178 AFAQKYNKEEAVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDAFAVKQACKFAKQHALEKGPIILEMDTYRYHGHSMSDPGSTYRTRDEI 306          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODPA_PEA (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 2.321e-68
Identity = 120/129 (93.02%), Postives = 126/129 (97.67%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 402
            AF QKY KDE+VTFALYGDGAANQGQLFEALNI+ALWDLPAILVCENNHYGMGTA WR+AKSP+Y+KRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGP+ILEMDTYRYHGHSMSDPGSTYRTRDEI
Sbjct:  186 AFGQKYLKDESVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTATWRSAKSPAYFKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEI 314          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODPA_SOLTU (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 7.466e-67
Identity = 116/129 (89.92%), Postives = 124/129 (96.12%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 402
            AFAQKY K++ VTFA+YGDGAANQGQLFEALN+AALWDLPAILVCENNHYGMGTAEWRAAKSP+YYKRGDYVPGL+VDGMD  AVKQAC FAK+HALKNGP+ILEMDTYRYHGHSMSDPGSTYRTRDEI
Sbjct:  180 AFAQKYKKEDYVTFAMYGDGAANQGQLFEALNMAALWDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLRVDGMDVFAVKQACTFAKQHALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEI 308          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODPA_KLULA (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Kluyveromyces lactis GN=PDA1 PE=3 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 3.605e-45
Identity = 83/130 (63.85%), Postives = 104/130 (80.00%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 402
            AFA +Y  ++  +FALYGDGA+NQGQ+FE+ N+A LW+LPA+  CENN YGMGTA  R++    Y+KRG Y+PGLKV+GMD LAV QA KFAK+  +  NGP++LE +TYRY GHSMSDPG+TYRTRDEI
Sbjct:  190 AFAHQYKHEDACSFALYGDGASNQGQVFESFNMAKLWNLPAVFCCENNKYGMGTAAARSSAMTEYFKRGQYIPGLKVNGMDILAVYQASKFAKDWTVSGNGPIVLEYETYRYGGHSMSDPGTTYRTRDEI 319          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODPA_DICDI (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=pdhA PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.370e-44
Identity = 86/130 (66.15%), Postives = 100/130 (76.92%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHA-LKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 402
            AFAQKY+K   V  A+YGDGAANQGQLFEA N+A+LW LP I +CENN YGMGT++ R+     +Y RG YV GLKVDGMD  AVK+A K+A E     NGP+ILEMDTYRY GHSMSDPG TYRTR+E+
Sbjct:  169 AFAQKYNKTGNVCLAMYGDGAANQGQLFEAFNMASLWKLPVIFICENNKYGMGTSQKRSTAGHDFYTRGHYVAGLKVDGMDVFAVKEAGKYAAEWCRAGNGPIILEMDTYRYVGHSMSDPGITYRTREEV 298          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODPA_SMIMA (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial (Fragment) OS=Sminthopsis macroura GN=PDHA PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 3.052e-44
Identity = 81/130 (62.31%), Postives = 100/130 (76.92%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 402
            A A KY++ + +   LYGDGAANQGQ+FEA N+AALW LP I +CENN YGMGT+  RAA S  YYKRGD++PG+ VDGMD L V++A KFA  +     GPM++E+ TYRYHGHSMSDPG +YRTR+EI
Sbjct:  151 ALACKYNEKDEICLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGIMVDGMDVLCVREATKFAAAYCRSGKGPMLMELQTYRYHGHSMSDPGVSYRTREEI 280          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODPA_YEAST (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=PDA1 PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 3.986e-44
Identity = 81/130 (62.31%), Postives = 101/130 (77.69%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 402
            AFA +Y  ++  +F LYGDGA+NQGQ+FE+ N+A LW+LP +  CENN YGMGTA  R++    Y+KRG Y+PGLKV+GMD LAV QA KFAK+  L   GP++LE +TYRY GHSMSDPG+TYRTRDEI
Sbjct:  198 AFAHQYKNEDACSFTLYGDGASNQGQVFESFNMAKLWNLPVVFCCENNKYGMGTAASRSSAMTEYFKRGQYIPGLKVNGMDILAVYQASKFAKDWCLSGKGPLVLEYETYRYGGHSMSDPGTTYRTRDEI 327          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODPA_RAT (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Rattus norvegicus GN=Pdha1 PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 5.206e-44
Identity = 82/130 (63.08%), Postives = 100/130 (76.92%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 402
            A A KY+  + V   LYGDGAANQGQ+FEA N+AALW LP I +CENN YGMGT+  RAA S  YYKRGD++PGL+VDGMD L V++A KFA  +     GP+++E+ TYRYHGHSMSDPG +YRTR+EI
Sbjct:  178 ALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATKFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEI 307          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODPA_MOUSE (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Mus musculus GN=Pdha1 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 5.206e-44
Identity = 82/130 (63.08%), Postives = 100/130 (76.92%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 402
            A A KY+  + V   LYGDGAANQGQ+FEA N+AALW LP I +CENN YGMGT+  RAA S  YYKRGD++PGL+VDGMD L V++A KFA  +     GP+++E+ TYRYHGHSMSDPG +YRTR+EI
Sbjct:  178 ALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATKFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEI 307          
The following BLAST results are available for this feature:
BLAST of CF509533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
ODPA2_ARATH4.676e-6993.80Pyruvate dehydrogenase E1 component subunit alpha-... [more]
ODPA1_ARATH1.777e-6893.02Pyruvate dehydrogenase E1 component subunit alpha-... [more]
ODPA_PEA2.321e-6893.02Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_SOLTU7.466e-6789.92Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_KLULA3.605e-4563.85Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_DICDI1.370e-4466.15Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_SMIMA3.052e-4462.31Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_YEAST3.986e-4462.31Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_RAT5.206e-4463.08Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_MOUSE5.206e-4463.08Pyruvate dehydrogenase E1 component subunit alpha,... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-041 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509533 ID=CF509533; Name=CF509533; organism=Citrus sinensis; type=EST; length=402bp
TCCCCCGGGCTGCAGGCTTTCGCGCAGAAGTACTCGAAGGATGAAACGGT
GACGTTTGCACTGTATGGAGACGGTGCAGCAAACCAGGGCCAGTTGTTCG
AGGCTCTCAATATAGCAGCGCTTTGGGATCTGCCGGCGATTTTGGTCTGC
GAGAATAATCACTATGGAATGGGGACAGCTGAGTGGAGAGCGGCAAAGAG
TCCCTCATACTACAAGCGTGGGGATTATGTTCCCGGTTTGAAGGTGGATG
GCATGGATGCCCTTGCTGTCAAACAAGCATGCAAGTTTGCTAAGGAGCAT
GCCTTAAAGAATGGACCTATGATACTTGAAATGGACACATACAGGTATCA
TGGTCACTCCATGTCTGACCCTGGAAGCACCTACCGTACTCGTGATGAGA
TC
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