CF509536

Overview
NameCF509536
Unique NameCF509536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length410
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1624 contig Csv1_Contig1624:25..434. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2A6_ARATH (Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.987e-37
Identity = 82/116 (70.69%), Postives = 82/116 (70.69%), Query Frame = 2 
Query:   62 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNL 409
            MAGRGKTL                LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNL
Sbjct:    1 MAGRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNL 116
[Close]
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.035e-36
Identity = 81/116 (69.83%), Postives = 81/116 (69.83%), Query Frame = 2 
Query:   62 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNL 409
            MAGRGKTL                LQFPVGRIARFLK GKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNL
Sbjct:    1 MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNL 116
[Close]
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2A3_ARATH (Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.964e-36
Identity = 81/116 (69.83%), Postives = 81/116 (69.83%), Query Frame = 2 
Query:   62 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNL 409
            MAGRGK L                LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNL
Sbjct:    1 MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNL 116
[Close]
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2A2_ARATH (Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.476e-35
Identity = 79/116 (68.10%), Postives = 80/116 (68.97%), Query Frame = 2 
Query:   62 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNL 409
            MAGRGKTL                LQFPVGRIARFLK GKYA RVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH+L
Sbjct:    1 MAGRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSL 116
[Close]
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSJ (Probable histone H2A.3 OS=Oryza sativa subsp. japonica GN=Os08g0427700 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.763e-35
Identity = 78/116 (67.24%), Postives = 80/116 (68.97%), Query Frame = 2 
Query:   62 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNL 409
            MAGRGK +                LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNL
Sbjct:    1 MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNL 116
[Close]
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSI (Probable histone H2A.3 OS=Oryza sativa subsp. indica GN=OsI_028288 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.763e-35
Identity = 78/116 (67.24%), Postives = 80/116 (68.97%), Query Frame = 2 
Query:   62 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNL 409
            MAGRGK +                LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNL
Sbjct:    1 MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNL 116
[Close]
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSJ (Probable histone H2A.2 OS=Oryza sativa subsp. japonica GN=Os07g0545400 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.841e-34
Identity = 77/116 (66.38%), Postives = 80/116 (68.97%), Query Frame = 2 
Query:   62 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNL 409
            MAGRGK +                LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNL
Sbjct:    1 MAGRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNL 116
[Close]
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSI (Probable histone H2A.2 OS=Oryza sativa subsp. indica GN=OsI_025469 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.841e-34
Identity = 77/116 (66.38%), Postives = 80/116 (68.97%), Query Frame = 2 
Query:   62 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNL 409
            MAGRGK +                LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNL
Sbjct:    1 MAGRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNL 116
[Close]
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 4.846e-34
Identity = 77/116 (66.38%), Postives = 80/116 (68.97%), Query Frame = 2 
Query:   62 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNL 409
            MAGRGK +                LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNL
Sbjct:    1 MAGRGKAIGSGAAKKAISRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGMVTIASGGVMPNIHNL 116
[Close]
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2A8_ORYSI (Probable histone H2A.8 OS=Oryza sativa subsp. indica GN=OsI_036919 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.193e-32
Identity = 74/114 (64.91%), Postives = 77/114 (67.54%), Query Frame = 2 
Query:   62 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH 403
            MAGRGK +                LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEEL+KLLG  TIA+GGVMPNIH
Sbjct:    1 MAGRGKAIGAGAAKKATSRSSKGGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIH 114
The following BLAST results are available for this feature:
BLAST of CF509536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2A6_ARATH7.987e-3770.69Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1... [more]
H2A1_ARATH3.035e-3669.83Probable histone H2A.1 OS=Arabidopsis thaliana GN=... [more]
H2A3_ARATH3.964e-3669.83Probable histone H2A.3 OS=Arabidopsis thaliana GN=... [more]
H2A2_ARATH7.476e-3568.10Probable histone H2A.2 OS=Arabidopsis thaliana GN=... [more]
H2A3_ORYSJ9.763e-3567.24Probable histone H2A.3 OS=Oryza sativa subsp. japo... [more]
H2A3_ORYSI9.763e-3567.24Probable histone H2A.3 OS=Oryza sativa subsp. indi... [more]
H2A2_ORYSJ2.841e-3466.38Probable histone H2A.2 OS=Oryza sativa subsp. japo... [more]
H2A2_ORYSI2.841e-3466.38Probable histone H2A.2 OS=Oryza sativa subsp. indi... [more]
H2A7_WHEAT4.846e-3466.38Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 S... [more]
H2A8_ORYSI1.193e-3264.91Probable histone H2A.8 OS=Oryza sativa subsp. indi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-044 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509536 ID=CF509536; Name=CF509536; organism=Citrus sinensis; type=EST; length=410bp
CAAGTCTCAACCTTTTGCTCTTTCCATTTTCCTTTCTTCGTTAAGAGCTT
ATTCACTTGAGATGGCGGGTCGGGGCAAGACTCTCGGGTCCGGGGCGGCG
AAGAAGGCCACCTCACGTAGCAGCAAAGCGGGGCTTCAATTTCCCGTCGG
TCGTATTGCCAGGTTCCTGAAAGCCGGGAAATATGCTGAACGGGTCGGTG
CCGGAGCCCCGGTTTATCTCGCCGCCGTCCTTGAATATCTCGCCGCTGAG
GTTTTGGAATTAGCTGGAAATGCTGCAAGGGACAACAAGAAAACACGAAT
TGTCCCTCGCCACATCCAATTGGCTGTCAGGAATGATGAGGAGCTCAGCA
AGCTTCTTGGGGATGTTACCATTGCTAACGGTGGTGTGATGCCCAACATC
CACAACCTTC
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