CF509537

Overview
NameCF509537
Unique NameCF509537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10991 contig Csv1_Contig10991:648..1213. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509537 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 301.597 bits (771), Expect = 4.173e-92
Identity = 147/162 (90.74%), Postives = 151/162 (93.21%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNE*RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVS 488
            +TLLPE+NQDENA+EKE       RF VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQEL AKDLH NE RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHA+S
Sbjct:  134 ITLLPEANQDENAIEKEAPLPPPPRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAIS 295          

HSP 2 Score: 58.151 bits (139), Expect = 4.173e-92
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 2
Query:  488 TGTMFTVYYKPRTSPSEFIVPYDQYM 565
            TGTMFTVYYKPRTSPSEFIVP+DQYM
Sbjct:  296 TGTMFTVYYKPRTSPSEFIVPFDQYM 321          
BLAST of CF509537 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 1.589e-82
Identity = 140/167 (83.83%), Postives = 146/167 (87.43%), Query Frame = 3
Query:    3 VTLLPESNQDEN--AVEKEXXXXXXX---RFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNE*RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVS 488
            +TLLPES Q E+  + E+E          R  VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQEL AKDLHG E RFRHIFRGQPRRHLLQSGWSVFVS+KRLVAGDAFIFLRGENGELRVGVRRAMRQQ NVPSSVISSHSMHLGVLATAWHAV+
Sbjct:  114 LTLLPESKQQEDNGSTEEEVPSAPAAGHVRPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLRGENGELRVGVRRAMRQQTNVPSSVISSHSMHLGVLATAWHAVN 280          

HSP 2 Score: 56.6102 bits (135), Expect = 1.589e-82
Identity = 23/26 (88.46%), Postives = 26/26 (100.00%), Query Frame = 2
Query:  488 TGTMFTVYYKPRTSPSEFIVPYDQYM 565
            TGTMFTVYYKPRTSP+EF+VPYD+YM
Sbjct:  281 TGTMFTVYYKPRTSPAEFVVPYDRYM 306          
BLAST of CF509537 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 7.824e-82
Identity = 139/167 (83.23%), Postives = 145/167 (86.83%), Query Frame = 3
Query:    3 VTLLPESNQDEN--AVEKEXXXXXXX---RFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNE*RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVS 488
            +TLLPE  Q E+  + E+E          R  VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQEL AKDLHG E RFRHIFRGQPRRHLLQSGWSVFVS+KRLVAGDAFIFLRGENGELRVGVRRAMRQQ NVPSSVISSHSMHLGVLATAWHAV+
Sbjct:  114 LTLLPELKQQEDNGSTEEEVPSAPAAGHVRPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLRGENGELRVGVRRAMRQQTNVPSSVISSHSMHLGVLATAWHAVN 280          

HSP 2 Score: 56.6102 bits (135), Expect = 7.824e-82
Identity = 23/26 (88.46%), Postives = 26/26 (100.00%), Query Frame = 2
Query:  488 TGTMFTVYYKPRTSPSEFIVPYDQYM 565
            TGTMFTVYYKPRTSP+EF+VPYD+YM
Sbjct:  281 TGTMFTVYYKPRTSPAEFVVPYDRYM 306          
BLAST of CF509537 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.589e-79
Identity = 138/174 (79.31%), Postives = 144/174 (82.76%), Query Frame = 3
Query:    3 VTLLPESNQDENA----------VEKEXXXXXXX--RFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNE*RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVS 488
            +TLLPE  QD N           VE+E         R  VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMS+ PPTQEL AKDLHG E RFRHIFRGQPRRHLLQSGWSVFVS+KRLVAGDAFIFLRGENGELRVGVRRAMRQQ N+PSSVISSHSMHLGVLATAWHAV+
Sbjct:  106 LTLLPEKQQDGNGSGNGNVSKDKVEEEEVVPPAATERPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQHPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLRGENGELRVGVRRAMRQQANIPSSVISSHSMHLGVLATAWHAVN 279          

HSP 2 Score: 51.2174 bits (121), Expect = 1.589e-79
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 2
Query:  488 TGTMFTVYYKPRTSPSEFIVPYDQY 562
            TGTMFTVYYKPRTSPSEF+VP D Y
Sbjct:  280 TGTMFTVYYKPRTSPSEFVVPRDLY 304          
BLAST of CF509537 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 5.026e-78
Identity = 131/164 (79.88%), Postives = 139/164 (84.76%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFH--VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNE*RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVS 488
            V L+PE  Q+E AVEK        +    V SFCKTLTASDTSTHGGFSVLRRHADECLPPLDM++ PPTQEL AKDLH  + RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQ  NVPSSVISS SMHLGVLATAWHA++
Sbjct:   97 VMLMPEPEQNEMAVEKTTPTSGPVQARPPVRSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTQSPPTQELVAKDLHSMDWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQLSNVPSSVISSQSMHLGVLATAWHAIN 260          

HSP 2 Score: 54.6842 bits (130), Expect = 5.026e-78
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 2
Query:  488 TGTMFTVYYKPRTSPSEFIVPYDQYM 565
            T +MFTVYYKPRTSPSEFI+PYDQYM
Sbjct:  261 TKSMFTVYYKPRTSPSEFIIPYDQYM 286          
BLAST of CF509537 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.582e-70
Identity = 124/162 (76.54%), Postives = 137/162 (84.57%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNE*RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVS 488
            + L PE++Q+E    K        + +VHSFCKTLTASDTSTHGGFSVLRRHA+ECLPPLDM++ PP QEL A+DLHGNE  FRHIFRGQPRRHLL +GWSVFVSSKRLVAGDAFIFLRGENGELRVGVRR MRQ  N+PSSVISSHSMHLGVLATA HA+S
Sbjct:   99 IMLQPEADQNELTSPKPEPHEPE-KCNVHSFCKTLTASDTSTHGGFSVLRRHAEECLPPLDMTQNPPWQELVARDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAIS 259          

HSP 2 Score: 40.817 bits (94), Expect = 1.582e-70
Identity = 16/26 (61.54%), Postives = 23/26 (88.46%), Query Frame = 2
Query:  488 TGTMFTVYYKPRTSPSEFIVPYDQYM 565
            TGT+F+V+YKPRTS SEF+V  ++Y+
Sbjct:  260 TGTLFSVFYKPRTSQSEFVVSANKYL 285          
BLAST of CF509537 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 1.726e-69
Identity = 122/162 (75.31%), Postives = 135/162 (83.33%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNE*RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVS 488
            +TLLPE +Q E     +       +  VHSFCKTLTASDTSTHGGFSVLRRHAD+CLPPLDMS+QPP QEL A DLH +E  FRHIFRGQPRRHLL +GWSVFVSSK+LVAGDAFIFLRGEN ELRVGVRR MRQQ N+PSSVISSHSMH+GVLATA HA++
Sbjct:   95 ITLLPELDQSE-PTSPDAPVQEPEKCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENEELRVGVRRHMRQQTNIPSSVISSHSMHIGVLATAAHAIT 255          

HSP 2 Score: 40.817 bits (94), Expect = 1.726e-69
Identity = 17/26 (65.38%), Postives = 23/26 (88.46%), Query Frame = 2
Query:  488 TGTMFTVYYKPRTSPSEFIVPYDQYM 565
            TGT+F+V+YKPRTS SEFIV  ++Y+
Sbjct:  256 TGTIFSVFYKPRTSRSEFIVSVNRYL 281          
BLAST of CF509537 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 3.201e-68
Identity = 121/162 (74.69%), Postives = 132/162 (81.48%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNE*RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVS 488
            + L PE++Q E     +       +   HSFCKTLTASDTSTHGGFSVLRRHA+ECLP LDMS+ PP QEL AKDLHG E  FRHIFRGQPRRHLL +GWSVFVSSKRLVAGDAFIFLRGE+GELRVGVRR MRQ  N+PSSVISSHSMHLGVLATA HA+S
Sbjct:   97 IMLQPEADQSE-LTSLDPELQDLEKCTAHSFCKTLTASDTSTHGGFSVLRRHAEECLPQLDMSQNPPCQELVAKDLHGTEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLRGESGELRVGVRRLMRQVNNMPSSVISSHSMHLGVLATASHAIS 257          

HSP 2 Score: 40.817 bits (94), Expect = 3.201e-68
Identity = 16/26 (61.54%), Postives = 23/26 (88.46%), Query Frame = 2
Query:  488 TGTMFTVYYKPRTSPSEFIVPYDQYM 565
            TGT+F+V+YKPRTS SEF+V  ++Y+
Sbjct:  258 TGTLFSVFYKPRTSRSEFVVSVNKYL 283          
BLAST of CF509537 vs. ExPASy Swiss-Prot
Match: ARFI_ARATH (Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 9.128e-62
Identity = 110/160 (68.75%), Postives = 129/160 (80.62%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNE*RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHA 482
            +TL+P   + +  +  +       R  VHSF K LTASDTSTHGGFSVLR+HA ECLPPLDM++Q PTQEL A+D+HG + +F+HIFRGQPRRHLL +GWS FV+SKRLVAGD F+FLRGENGELRVGVRRA  QQ ++PSSVISSHSMHLGVLATA HA
Sbjct:   86 ITLIPVGTEVDEPMSPDPSPPELQRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRANLQQSSMPSSVISSHSMHLGVLATARHA 245          

HSP 2 Score: 32.7278 bits (73), Expect = 9.128e-62
Identity = 15/26 (57.69%), Postives = 20/26 (76.92%), Query Frame = 2
Query:  488 TGTMFTVYYKPRTSPSEFIVPYDQYM 565
            T TMF VYYKPRT  S+FI+  ++Y+
Sbjct:  248 TKTMFIVYYKPRT--SQFIISLNKYL 271          
BLAST of CF509537 vs. ExPASy Swiss-Prot
Match: ARFA_ORYSJ (Auxin response factor 1 OS=Oryza sativa subsp. japonica GN=ARF1 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 4.436e-58
Identity = 103/161 (63.98%), Postives = 126/161 (78.26%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNE*RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAV 485
            +TL P+ +Q+      +       R  VHSFCK LT SDTSTHGGFSVLRRHA+ECLPPLDMS   PTQEL  KDLHG+E RF+HI+RGQPRRHLL +GWS FV+SK+L++GDAF++LR E GE RVGVRR +++Q  +P+SVISS SMHLGVLA+A HA+
Sbjct:   92 ITLQPDPDQENLPTLPDPPLPEQPRPVVHSFCKILTPSDTSTHGGFSVLRRHANECLPPLDMSMATPTQELITKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLISGDAFVYLRSETGEQRVGVRRLVQKQSTMPASVISSQSMHLGVLASASHAI 252          

HSP 2 Score: 32.3426 bits (72), Expect = 4.436e-58
Identity = 12/26 (46.15%), Postives = 20/26 (76.92%), Query Frame = 2
Query:  488 TGTMFTVYYKPRTSPSEFIVPYDQYM 565
            T ++F VYY+PR S S++IV  ++Y+
Sbjct:  254 TNSIFLVYYRPRLSQSQYIVSVNKYL 279          
The following BLAST results are available for this feature:
BLAST of CF509537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
ARFB_ARATH4.173e-9290.74Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
ARFW_ORYSJ1.589e-8283.83Auxin response factor 23 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSI7.824e-8283.23Auxin response factor 23 OS=Oryza sativa subsp. in... [more]
ARFX_ORYSJ1.589e-7979.31Auxin response factor 24 OS=Oryza sativa subsp. ja... [more]
ARFD_ORYSJ5.026e-7879.88Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]
ARFG_ORYSJ1.582e-7076.54Auxin response factor 7 OS=Oryza sativa subsp. jap... [more]
ARFA_ARATH1.726e-6975.31Auxin response factor 1 OS=Arabidopsis thaliana GN... [more]
ARFI_ORYSJ3.201e-6874.69Auxin response factor 9 OS=Oryza sativa subsp. jap... [more]
ARFI_ARATH9.128e-6268.75Auxin response factor 9 OS=Arabidopsis thaliana GN... [more]
ARFA_ORYSJ4.436e-5863.98Auxin response factor 1 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-045 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509537 ID=CF509537; Name=CF509537; organism=Citrus sinensis; type=EST; length=565bp
AAGTGACTTTACTTCCAGAGTCAAACCAAGATGAGAACGCGGTGGAGAAA
GAACCACCTCCACCCCCGCCACCAAGATTTCACGTGCATTCGTTTTGTAA
AACACTAACGGCATCGGATACAAGTACTCATGGTGGGTTTTCGGTACTGA
GACGGCATGCTGATGAGTGTCTTCCACCCTTGGACATGTCACGGCAGCCT
CCCACACAGGAGTTGGCTGCTAAGGATTTGCATGGAAATGAGTGACGGTT
CCGGCATATTTTCAGGGGTCAACCACGTAGACACTTGCTTCAGAGTGGAT
GGAGTGTTTTTGTTAGCTCAAAAAGACTAGTTGCAGGGGATGCTTTTATA
TTTTTGAGGGGTGAGAATGGCGAACTTCGTGTTGGTGTAAGGCGAGCAAT
GAGGCAGCAGGGTAATGTTCCATCTTCAGTCATATCTAGTCACAGCATGC
ATCTCGGTGTCCTTGCCACTGCATGGCATGCTGTCTCACAGGAACTATGT
TCACTGTCTATTACAAGCCAAGAACAAGCCCATCAGAGTTCATTGTTCCG
TATGATCAGTACATG
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