CF509537
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF509537 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2) HSP 1 Score: 301.597 bits (771), Expect = 4.173e-92 Identity = 147/162 (90.74%), Postives = 151/162 (93.21%), Query Frame = 3 Query: 3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNE*RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVS 488 +TLLPE+NQDENA+EKE RF VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQEL AKDLH NE RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHA+S Sbjct: 134 ITLLPEANQDENAIEKEAPLPPPPRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAIS 295 HSP 2 Score: 58.151 bits (139), Expect = 4.173e-92 Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 2 Query: 488 TGTMFTVYYKPRTSPSEFIVPYDQYM 565 TGTMFTVYYKPRTSPSEFIVP+DQYM Sbjct: 296 TGTMFTVYYKPRTSPSEFIVPFDQYM 321
BLAST of CF509537 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2) HSP 1 Score: 271.166 bits (692), Expect = 1.589e-82 Identity = 140/167 (83.83%), Postives = 146/167 (87.43%), Query Frame = 3 Query: 3 VTLLPESNQDEN--AVEKEXXXXXXX---RFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNE*RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVS 488 +TLLPES Q E+ + E+E R VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQEL AKDLHG E RFRHIFRGQPRRHLLQSGWSVFVS+KRLVAGDAFIFLRGENGELRVGVRRAMRQQ NVPSSVISSHSMHLGVLATAWHAV+ Sbjct: 114 LTLLPESKQQEDNGSTEEEVPSAPAAGHVRPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLRGENGELRVGVRRAMRQQTNVPSSVISSHSMHLGVLATAWHAVN 280 HSP 2 Score: 56.6102 bits (135), Expect = 1.589e-82 Identity = 23/26 (88.46%), Postives = 26/26 (100.00%), Query Frame = 2 Query: 488 TGTMFTVYYKPRTSPSEFIVPYDQYM 565 TGTMFTVYYKPRTSP+EF+VPYD+YM Sbjct: 281 TGTMFTVYYKPRTSPAEFVVPYDRYM 306
BLAST of CF509537 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1) HSP 1 Score: 268.855 bits (686), Expect = 7.824e-82 Identity = 139/167 (83.23%), Postives = 145/167 (86.83%), Query Frame = 3 Query: 3 VTLLPESNQDEN--AVEKEXXXXXXX---RFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNE*RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVS 488 +TLLPE Q E+ + E+E R VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQEL AKDLHG E RFRHIFRGQPRRHLLQSGWSVFVS+KRLVAGDAFIFLRGENGELRVGVRRAMRQQ NVPSSVISSHSMHLGVLATAWHAV+ Sbjct: 114 LTLLPELKQQEDNGSTEEEVPSAPAAGHVRPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLRGENGELRVGVRRAMRQQTNVPSSVISSHSMHLGVLATAWHAVN 280 HSP 2 Score: 56.6102 bits (135), Expect = 7.824e-82 Identity = 23/26 (88.46%), Postives = 26/26 (100.00%), Query Frame = 2 Query: 488 TGTMFTVYYKPRTSPSEFIVPYDQYM 565 TGTMFTVYYKPRTSP+EF+VPYD+YM Sbjct: 281 TGTMFTVYYKPRTSPAEFVVPYDRYM 306
BLAST of CF509537 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1) HSP 1 Score: 266.544 bits (680), Expect = 1.589e-79 Identity = 138/174 (79.31%), Postives = 144/174 (82.76%), Query Frame = 3 Query: 3 VTLLPESNQDENA----------VEKEXXXXXXX--RFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNE*RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVS 488 +TLLPE QD N VE+E R VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMS+ PPTQEL AKDLHG E RFRHIFRGQPRRHLLQSGWSVFVS+KRLVAGDAFIFLRGENGELRVGVRRAMRQQ N+PSSVISSHSMHLGVLATAWHAV+ Sbjct: 106 LTLLPEKQQDGNGSGNGNVSKDKVEEEEVVPPAATERPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQHPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLRGENGELRVGVRRAMRQQANIPSSVISSHSMHLGVLATAWHAVN 279 HSP 2 Score: 51.2174 bits (121), Expect = 1.589e-79 Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 2 Query: 488 TGTMFTVYYKPRTSPSEFIVPYDQY 562 TGTMFTVYYKPRTSPSEF+VP D Y Sbjct: 280 TGTMFTVYYKPRTSPSEFVVPRDLY 304
BLAST of CF509537 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1) HSP 1 Score: 258.07 bits (658), Expect = 5.026e-78 Identity = 131/164 (79.88%), Postives = 139/164 (84.76%), Query Frame = 3 Query: 3 VTLLPESNQDENAVEKEXXXXXXXRFH--VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNE*RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVS 488 V L+PE Q+E AVEK + V SFCKTLTASDTSTHGGFSVLRRHADECLPPLDM++ PPTQEL AKDLH + RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQ NVPSSVISS SMHLGVLATAWHA++ Sbjct: 97 VMLMPEPEQNEMAVEKTTPTSGPVQARPPVRSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTQSPPTQELVAKDLHSMDWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQLSNVPSSVISSQSMHLGVLATAWHAIN 260 HSP 2 Score: 54.6842 bits (130), Expect = 5.026e-78 Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 2 Query: 488 TGTMFTVYYKPRTSPSEFIVPYDQYM 565 T +MFTVYYKPRTSPSEFI+PYDQYM Sbjct: 261 TKSMFTVYYKPRTSPSEFIIPYDQYM 286
BLAST of CF509537 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1) HSP 1 Score: 246.899 bits (629), Expect = 1.582e-70 Identity = 124/162 (76.54%), Postives = 137/162 (84.57%), Query Frame = 3 Query: 3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNE*RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVS 488 + L PE++Q+E K + +VHSFCKTLTASDTSTHGGFSVLRRHA+ECLPPLDM++ PP QEL A+DLHGNE FRHIFRGQPRRHLL +GWSVFVSSKRLVAGDAFIFLRGENGELRVGVRR MRQ N+PSSVISSHSMHLGVLATA HA+S Sbjct: 99 IMLQPEADQNELTSPKPEPHEPE-KCNVHSFCKTLTASDTSTHGGFSVLRRHAEECLPPLDMTQNPPWQELVARDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAIS 259 HSP 2 Score: 40.817 bits (94), Expect = 1.582e-70 Identity = 16/26 (61.54%), Postives = 23/26 (88.46%), Query Frame = 2 Query: 488 TGTMFTVYYKPRTSPSEFIVPYDQYM 565 TGT+F+V+YKPRTS SEF+V ++Y+ Sbjct: 260 TGTLFSVFYKPRTSQSEFVVSANKYL 285
BLAST of CF509537 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2) HSP 1 Score: 243.432 bits (620), Expect = 1.726e-69 Identity = 122/162 (75.31%), Postives = 135/162 (83.33%), Query Frame = 3 Query: 3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNE*RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVS 488 +TLLPE +Q E + + VHSFCKTLTASDTSTHGGFSVLRRHAD+CLPPLDMS+QPP QEL A DLH +E FRHIFRGQPRRHLL +GWSVFVSSK+LVAGDAFIFLRGEN ELRVGVRR MRQQ N+PSSVISSHSMH+GVLATA HA++ Sbjct: 95 ITLLPELDQSE-PTSPDAPVQEPEKCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENEELRVGVRRHMRQQTNIPSSVISSHSMHIGVLATAAHAIT 255 HSP 2 Score: 40.817 bits (94), Expect = 1.726e-69 Identity = 17/26 (65.38%), Postives = 23/26 (88.46%), Query Frame = 2 Query: 488 TGTMFTVYYKPRTSPSEFIVPYDQYM 565 TGT+F+V+YKPRTS SEFIV ++Y+ Sbjct: 256 TGTIFSVFYKPRTSRSEFIVSVNRYL 281
BLAST of CF509537 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 3.201e-68 Identity = 121/162 (74.69%), Postives = 132/162 (81.48%), Query Frame = 3 Query: 3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNE*RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVS 488 + L PE++Q E + + HSFCKTLTASDTSTHGGFSVLRRHA+ECLP LDMS+ PP QEL AKDLHG E FRHIFRGQPRRHLL +GWSVFVSSKRLVAGDAFIFLRGE+GELRVGVRR MRQ N+PSSVISSHSMHLGVLATA HA+S Sbjct: 97 IMLQPEADQSE-LTSLDPELQDLEKCTAHSFCKTLTASDTSTHGGFSVLRRHAEECLPQLDMSQNPPCQELVAKDLHGTEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLRGESGELRVGVRRLMRQVNNMPSSVISSHSMHLGVLATASHAIS 257 HSP 2 Score: 40.817 bits (94), Expect = 3.201e-68 Identity = 16/26 (61.54%), Postives = 23/26 (88.46%), Query Frame = 2 Query: 488 TGTMFTVYYKPRTSPSEFIVPYDQYM 565 TGT+F+V+YKPRTS SEF+V ++Y+ Sbjct: 258 TGTLFSVFYKPRTSRSEFVVSVNKYL 283
BLAST of CF509537 vs. ExPASy Swiss-Prot
Match: ARFI_ARATH (Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 9.128e-62 Identity = 110/160 (68.75%), Postives = 129/160 (80.62%), Query Frame = 3 Query: 3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNE*RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHA 482 +TL+P + + + + R VHSF K LTASDTSTHGGFSVLR+HA ECLPPLDM++Q PTQEL A+D+HG + +F+HIFRGQPRRHLL +GWS FV+SKRLVAGD F+FLRGENGELRVGVRRA QQ ++PSSVISSHSMHLGVLATA HA Sbjct: 86 ITLIPVGTEVDEPMSPDPSPPELQRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRANLQQSSMPSSVISSHSMHLGVLATARHA 245 HSP 2 Score: 32.7278 bits (73), Expect = 9.128e-62 Identity = 15/26 (57.69%), Postives = 20/26 (76.92%), Query Frame = 2 Query: 488 TGTMFTVYYKPRTSPSEFIVPYDQYM 565 T TMF VYYKPRT S+FI+ ++Y+ Sbjct: 248 TKTMFIVYYKPRT--SQFIISLNKYL 271
BLAST of CF509537 vs. ExPASy Swiss-Prot
Match: ARFA_ORYSJ (Auxin response factor 1 OS=Oryza sativa subsp. japonica GN=ARF1 PE=2 SV=1) HSP 1 Score: 213.772 bits (543), Expect = 4.436e-58 Identity = 103/161 (63.98%), Postives = 126/161 (78.26%), Query Frame = 3 Query: 3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNE*RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAV 485 +TL P+ +Q+ + R VHSFCK LT SDTSTHGGFSVLRRHA+ECLPPLDMS PTQEL KDLHG+E RF+HI+RGQPRRHLL +GWS FV+SK+L++GDAF++LR E GE RVGVRR +++Q +P+SVISS SMHLGVLA+A HA+ Sbjct: 92 ITLQPDPDQENLPTLPDPPLPEQPRPVVHSFCKILTPSDTSTHGGFSVLRRHANECLPPLDMSMATPTQELITKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLISGDAFVYLRSETGEQRVGVRRLVQKQSTMPASVISSQSMHLGVLASASHAI 252 HSP 2 Score: 32.3426 bits (72), Expect = 4.436e-58 Identity = 12/26 (46.15%), Postives = 20/26 (76.92%), Query Frame = 2 Query: 488 TGTMFTVYYKPRTSPSEFIVPYDQYM 565 T ++F VYY+PR S S++IV ++Y+ Sbjct: 254 TNSIFLVYYRPRLSQSQYIVSVNKYL 279 The following BLAST results are available for this feature:
BLAST of CF509537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >CF509537 ID=CF509537; Name=CF509537; organism=Citrus sinensis; type=EST; length=565bpback to top |