CF509538

Overview
NameCF509538
Unique NameCF509538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4101 contig Csv1_Contig4101:1..468. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509538 vs. ExPASy Swiss-Prot
Match: HS185_ARATH (18.5 kDa class IV heat shock protein OS=Arabidopsis thaliana GN=HSP18.5 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.540e-28
Identity = 72/145 (49.66%), Postives = 89/145 (61.38%), Query Frame = 3
Query:   45 MSIVPVSDQGIISNTPLSSEVWGPFQ--NFLEEFPLSIDLWGPFSDFPSLSRGIFP-----TRQTQINWSETPRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTDDGKFMSRFKLPDNAITDQVKASMNYGLLTVTVSKEMSLQP 458
            MS++P+S++  +S       +W PF+  N   +FP           FPSLSR IFP     T  TQ+NW+ETP AHVFKAY PG+  D+VI FVDE+  LQI T D KFMSRFKLP+NA+TDQV A M    L V V K+ S  P
Sbjct:    1 MSMIPISNRRRLSP---GDRIWEPFELMNTFLDFPSPALFLS--HHFPSLSREIFPQTSSSTVNTQLNWTETPTAHVFKAYLPGVDQDEVIAFVDEEGYLQICTGDNKFMSRFKLPNNALTDQVTAWMEDEFLVVFVEKDASSSP 140          
BLAST of CF509538 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.109e-23
Identity = 61/134 (45.52%), Postives = 79/134 (58.96%), Query Frame = 3
Query:  141 PLSIDLWGPFSDFP----SLSRGIFPTRQ-----TQINWSETPRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLTVTVSKEMSLQPQ 461
            P S+D+W PF DFP    +LS   FP        T+I+W ETP AHVFKA  PGL  ++V V +++DR+LQIS +                   GKFM RF+LP+NA  DQVKA+M  G+LTVTV KE   +P+
Sbjct:    2 PFSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPE 135          
BLAST of CF509538 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.933e-22
Identity = 60/135 (44.44%), Postives = 81/135 (60.00%), Query Frame = 3
Query:  141 PLSIDLWGPFSDFP---SLSRGIFP--TRQ------TQINWSETPRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLTVTVSKEMSLQP 458
            P S+D+W PF DFP   +LS   FP  +R+      T+++W ETP AHVFKA  PGL  ++V V +++D++LQIS +                   GKFM RF+LP+NA  +QVKASM  G+LTVTV KE   +P
Sbjct:   18 PFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKP 152          
BLAST of CF509538 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.933e-22
Identity = 58/133 (43.61%), Postives = 77/133 (57.89%), Query Frame = 3
Query:  141 PLSIDLWGPFSDFP---SLSRGIFPTRQ-----TQINWSETPRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLTVTVSKEMSLQPQ 461
            P S+D+W PF DFP   S     FP        T+++W ETP AHVFKA  PG+  ++V V +++DR+LQIS +                   GKFM RF+LP+NA  DQVKA+M  G+LTVTV KE   +P+
Sbjct:   18 PFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPE 150          
BLAST of CF509538 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.560e-21
Identity = 65/153 (42.48%), Postives = 85/153 (55.56%), Query Frame = 3
Query:   45 MSIVPVSDQGIISNT--PLSSEVWGPFQNFLEEFPLSIDLWGPFSDFPSLSRGIFPTRQTQINWSETPRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLTVTVSKE 443
            MS++P    G  SN   P S +VW P    L++FP S     P + FP  +     TR   ++W ETP AHVFKA  PGL  ++V V V++DR+LQIS +                   GKF+ RF+LP+NA  D+VKASM  G+LTVTV KE
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDP----LKDFPFSNS--SPSASFPRENPAFVSTR---VDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKE 144          
BLAST of CF509538 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.909e-20
Identity = 56/127 (44.09%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  141 PLSIDLWGPFSDF---PSLSRGIFPTRQTQINWSETPRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLTVTVSKEMSLQP 458
            P S+D+W PF DF    SLS        T+++W ETP AHVF+A  PGL  ++V V +++DR+LQIS +                   G FM RF+LP+NA  +QVKASM  G+LTVTV KE   +P
Sbjct:   18 PFSLDVWDPFKDFHFPTSLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKP 144          
BLAST of CF509538 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.909e-20
Identity = 60/127 (47.24%), Postives = 75/127 (59.06%), Query Frame = 3
Query:  141 PLSIDLWGPFSD--FPSLSRGIFPT-RQTQINWSETPRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLTVTVSKEMSLQP 458
            P SID++ PF +  FP  + G       T+I+W ETP AHVFKA  PGL  ++V V V+EDR+LQIS +                   GKFM RF+LP+NA  DQVKASM  G+LTVTV KE   +P
Sbjct:   19 PFSIDVFDPFRELGFPGTNSGETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKP 145          
BLAST of CF509538 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.493e-20
Identity = 56/127 (44.09%), Postives = 73/127 (57.48%), Query Frame = 3
Query:  141 PLSIDLWGPFSDFP---SLSRGIFPTRQTQINWSETPRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLTVTVSKEMSLQP 458
            P S+D+W PF DFP   SLS        T+++W ETP AHVFKA  PGL  ++V + + + R+LQIS +                   GK + RF+LP+NA  DQVKASM  G+LTVTV KE   +P
Sbjct:   18 PFSLDVWDPFKDFPFPSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKP 144          
BLAST of CF509538 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.493e-20
Identity = 60/141 (42.55%), Postives = 76/141 (53.90%), Query Frame = 3
Query:  141 PLSIDLWGPFSDFP-----SLSRGIFPT------------RQTQINWSETPRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLTVTVSKEMSLQP 458
            P S+DLW PF  FP     S S  IFP+               +I+W ETP AHVFKA  PGL  ++V V VD+  +LQIS +                   GKF+ RF+LPDNA  +Q+KASM  G+LTVTV KE + +P
Sbjct:   12 PFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKP 152          
BLAST of CF509538 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.255e-20
Identity = 59/128 (46.09%), Postives = 75/128 (58.59%), Query Frame = 3
Query:  141 PLSIDLWGPFSD--FPSLSRGIFPT-RQTQINWSETPRAHVFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFMSRFKLPDNAITDQVKASMNYGLLTVTVSKEMSLQPQ 461
            P SID++ PF +  FPS + G       T+I+W ETP  HVFK   PGL  ++V V V+EDR+LQIS +                   GKFM RF+LP+NA  DQVKASM  G+LTVTV KE   +P+
Sbjct:   19 PFSIDVFDPFRELGFPSTNSGESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPE 146          
The following BLAST results are available for this feature:
BLAST of CF509538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
HS185_ARATH5.540e-2849.6618.5 kDa class IV heat shock protein OS=Arabidopsi... [more]
HSP11_MEDSA4.109e-2345.5218.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP16_SOYBN5.933e-2244.4418.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA5.933e-2243.6118.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_PEA6.560e-2142.4818.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP13_SOYBN1.909e-2044.0917.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_SOLPE1.909e-2047.2417.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_SOYBN2.493e-2044.0917.3 kDa class I heat shock protein OS=Glycine max... [more]
HS17A_ORYSJ2.493e-2042.5517.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_SOLLC3.255e-2046.0917.8 kDa class I heat shock protein OS=Solanum lyc... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-046 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509538 ID=CF509538; Name=CF509538; organism=Citrus sinensis; type=EST; length=473bp
ATCACTTGCACGTACGTTACCAAAGCCGAGAACCAGAAAGAAAAATGTCA
ATTGTTCCGGTAAGCGATCAAGGTATAATATCTAACACTCCTCTCTCTTC
AGAAGTATGGGGTCCCTTCCAGAACTTTCTAGAAGAATTCCCCTTATCCA
TTGACCTTTGGGGCCCATTCAGTGATTTTCCTTCACTTTCCCGGGGGATT
TTTCCAACCCGTCAAACCCAGATCAACTGGAGTGAGACCCCGAGAGCCCA
CGTGTTCAAAGCTTACTTTCCAGGGCTGACGGGAGACCAAGTGATAGTGT
TCGTCGATGAAGACAGAATGCTCCAAATAAGCACCGATGATGGCAAGTTC
ATGAGCAGGTTTAAGCTGCCTGATAATGCTATTACCGATCAGGTCAAGGC
TTCCATGAATTATGGGTTGCTCACTGTTACAGTCTCTAAGGAGATGTCAC
TGCAGCCACAAAATGTTAGGGTT
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