CF509541

Overview
NameCF509541
Unique NameCF509541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length409
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF509541 vs. ExPASy Swiss-Prot
Match: C3H11_ORYSJ (Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0834700 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.540e-19
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 3 
Query:  198 MPPKQ---SKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLKQSVEPRPDPT 350
            MPPK+   SKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSL Q+V+P+PDPT
Sbjct:    1 MPPKKAAPSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLHQAVQPKPDPT 54
[Close]
BLAST of CF509541 vs. ExPASy Swiss-Prot
Match: C3H21_ARATH (Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis thaliana GN=At2g20280 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.680e-18
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 3 
Query:  198 MPPKQS-KADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLKQSVEPRPDPT 350
            MPPKQ  KADLAKKQK VEDKTFGLKNKNKSKNVQKYVQSLKQSV+P+PD T
Sbjct:    1 MPPKQQPKADLAKKQKQVEDKTFGLKNKNKSKNVQKYVQSLKQSVQPKPDAT 52
The following BLAST results are available for this feature:
BLAST of CF509541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
C3H11_ORYSJ7.540e-1985.19Zinc finger CCCH domain-containing protein 11 OS=O... [more]
C3H21_ARATH1.680e-1888.46Zinc finger CCCH domain-containing protein 21 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-049 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509541 ID=CF509541; Name=CF509541; organism=Citrus sinensis; type=EST; length=409bp
CCCTTATTCAAAACCACTCTCATAAATCCGCTTAATGCCCTTTTCACTCT
GTGAAGAGTGAGGGAAAAGAATATATAAAAATACAATTTTGGACGCCAAT
TTTTTTTTTTTTTCAATCCTCCCGGAGTTATTTTAATTTAACCAATCAAA
TTTATTGGAGTGTGAATAATTTTTTTTTTTTGAATCGAATAAAAACGATG
CCGCCGAAGCAGTCAAAAGCCGACTTAGCGAAGAAACAGAAAGTGGTCGA
AGATAAAACGTTCGGACTGAAGAACAAGAATAAGAGCAAAAATGTTCAGA
AATACGTTCAAAGTCTCAAACAATCGGTTGAGCCCAGACCCGACCCGACT
AAAGTCGCCGTGCGGAAAAAGAAAGAGGAAGAGAAAGCCCGAGAGAAGGA
GCTGAATGA
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