CF509544

Overview
NameCF509544
Unique NameCF509544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length206
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10485 contig Csv1_Contig10485:47..253. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_NITEU (3-dehydroquinate synthase OS=Nitrosomonas europaea GN=aroB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.526e-22
Identity = 48/68 (70.59%), Postives = 60/68 (88.24%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            EL +G+AE+IKYGLI DA+FF+W EQ+M+ L+ARDP+A  YAI+RSCE KAE+VSLDE+ESGLRA LN
Sbjct:  184 ELRAGIAEIIKYGLIYDADFFDWLEQHMNSLLARDPAAVNYAIRRSCEIKAEIVSLDERESGLRALLN 251          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_NITEC (3-dehydroquinate synthase OS=Nitrosomonas eutropha (strain C91) GN=aroB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.678e-21
Identity = 46/68 (67.65%), Postives = 58/68 (85.29%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            EL +G+AEVIKYGLI DA+FF+W E++M +L+ARDP    YAI+RSCE KAE+VSLDE+ESG+RA LN
Sbjct:  184 ELRAGIAEVIKYGLIHDADFFDWLERHMQQLLARDPETMNYAIRRSCEIKAEIVSLDERESGVRALLN 251          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_DECAR (3-dehydroquinate synthase OS=Dechloromonas aromatica (strain RCB) GN=aroB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.960e-20
Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            EL +GLAEVIKYGLIRD +FF W E N+ KL+ RD SA AYA+ RSC NKAEVV+ DE+ESG RA LN
Sbjct:  181 ELKAGLAEVIKYGLIRDPDFFVWLEANLEKLLVRDKSALAYAVHRSCANKAEVVAADERESGERALLN 248          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_AZOSB (3-dehydroquinate synthase OS=Azoarcus sp. (strain BH72) GN=aroB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.755e-20
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            EL++GLAEVIKYGLIRD  F+ W E+N+ +L ARDP A AYAI+RSC NKAEVV+ DE E G RA LN
Sbjct:  177 ELSAGLAEVIKYGLIRDPAFYAWLEENIERLRARDPEALAYAIERSCRNKAEVVAADETEQGERALLN 244          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_METCA (3-dehydroquinate synthase OS=Methylococcus capsulatus GN=aroB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.823e-20
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            EL++GLAEVIKYG IRD EF  W E N+ +L+ RDP A AYAI+RSC NKAE+V+ DE E+G+RATLN
Sbjct:  175 ELSAGLAEVIKYGFIRDPEFLAWLEANVERLLQRDPEALAYAIERSCINKAEIVAEDETETGVRATLN 242          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_NITOC (3-dehydroquinate synthase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=aroB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.719e-19
Identity = 42/68 (61.76%), Postives = 57/68 (83.82%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            +L +GLAEVIKYGLIRD +FF W E++  +++AR+PSA  +AI+RSC NKAE+V+ DE+ESG+RA LN
Sbjct:  175 QLRAGLAEVIKYGLIRDIDFFTWLEEHASEVLAREPSALIHAIERSCRNKAEIVAADERESGVRAILN 242          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_THICR (3-dehydroquinate synthase OS=Thiomicrospira crunogena (strain XCL-2) GN=aroB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.755e-19
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            EL++GLAEVIKYGLI D  FFEW EQN+  L+ARDP   A AI+RSC+NKA +V+ DEKE+GLRA  N
Sbjct:  175 ELSAGLAEVIKYGLIVDYPFFEWLEQNLPGLLARDPVVLAEAIERSCQNKATIVAKDEKEAGLRALFN 242          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_THISH (3-dehydroquinate synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=aroB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.274e-18
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            EL +G+AEVIKYGLI D  FF+W E NM +L+ARDP A AYAI RSC +KA+VV+ DE+E G RA LN
Sbjct:  175 ELRAGIAEVIKYGLICDRPFFDWLEANMDRLLARDPEALAYAIHRSCHDKAQVVAEDEREGGRRAILN 242          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_KLEP7 (3-dehydroquinate synthase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=aroB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.274e-18
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            ELASGLAEVIKYG+I D EFF W E N+  L+A D +A AY I+R CE KAEVV+ DE+E+GLRA LN
Sbjct:  177 ELASGLAEVIKYGVILDGEFFSWLENNIDALLALDDTAMAYCIRRCCELKAEVVAADERETGLRALLN 244          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_KLEP3 (3-dehydroquinate synthase OS=Klebsiella pneumoniae (strain 342) GN=aroB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.664e-18
Identity = 45/68 (66.18%), Postives = 52/68 (76.47%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            ELASGLAEVIKYG+I D EFF W E N+  L+A D  A AY I+R CE KAEVV+ DE+E+GLRA LN
Sbjct:  177 ELASGLAEVIKYGVILDGEFFSWLENNIDALLALDEKAMAYCIRRCCELKAEVVAADERETGLRALLN 244          
The following BLAST results are available for this feature:
BLAST of CF509544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
AROB_NITEU5.526e-2270.593-dehydroquinate synthase OS=Nitrosomonas europaea... [more]
AROB_NITEC4.678e-2167.653-dehydroquinate synthase OS=Nitrosomonas eutropha... [more]
AROB_DECAR3.960e-2069.123-dehydroquinate synthase OS=Dechloromonas aromati... [more]
AROB_AZOSB6.755e-2067.653-dehydroquinate synthase OS=Azoarcus sp. (strain ... [more]
AROB_METCA8.823e-2066.183-dehydroquinate synthase OS=Methylococcus capsula... [more]
AROB_NITOC5.719e-1961.763-dehydroquinate synthase OS=Nitrosococcus oceani ... [more]
AROB_THICR9.755e-1966.183-dehydroquinate synthase OS=Thiomicrospira crunog... [more]
AROB_THISH1.274e-1864.713-dehydroquinate synthase OS=Thioalkalivibrio sp. ... [more]
AROB_KLEP71.274e-1866.183-dehydroquinate synthase OS=Klebsiella pneumoniae... [more]
AROB_KLEP31.664e-1866.183-dehydroquinate synthase OS=Klebsiella pneumoniae... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-052 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509544 ID=CF509544; Name=CF509544; organism=Citrus sinensis; type=EST; length=206bp
GGGAACTGGCATCAGGACTTGCAGAGGTTATCAAGTATGGGCTCATCAGG
GATGCAGAATTTTTTGAATGGCAGGAGCAAAATATGCATAAATTGATGGC
AAGGGATCCAAGTGCATTTGCTTATGCTATAAAGCGATCTTGTGAAAATA
AGGCTGAGGTTGTGTCCTTGGATGAGAAGGAGAGTGGACTAAGAGCAACA
CTAAAC
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