CF509552

Overview
NameCF509552
Unique NameCF509552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length365
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF509552_ssr48 microsatellite CF509552_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5711 contig Csv1_Contig5711:7..371. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509552 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.354e-28
Identity = 60/91 (65.93%), Postives = 74/91 (81.32%), Query Frame = 3
Query:   93 NMDIEEEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPP 365
            +M  EE++RLKYL+FVQ A +  LL F  +Y  AK KSGPLKPGVESVEG VK VVGPVY+KYH +P+E+LK++D+KVD SVT+LD RVPP
Sbjct:   13 DMTKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPP 103          
BLAST of CF509552 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.336e-27
Identity = 54/85 (63.53%), Postives = 72/85 (84.71%), Query Frame = 3
Query:  108 EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVP 362
            EE+RLKYL+FVQVA I+V++CF +LY YAK  SGPLKPGV++VEGTVK V+GPVY+K++ +P ELL F+DRKV+ S+ +L+  VP
Sbjct:   16 EEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVP 100          
BLAST of CF509552 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.267e-26
Identity = 59/102 (57.84%), Postives = 77/102 (75.49%), Query Frame = 3
Query:   69 EKNVPSQQNMDIE---EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPP 365
            E+ V  ++  ++E   EE+RL+YLEFVQ A   VL+     Y YAK  +GPL+PGV+ VEGTVK VVGPVYD++HG+P++LLKF+DRKV ESV +LD RVPP
Sbjct:   15 EEEVTVEKTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPP 116          
BLAST of CF509552 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.267e-26
Identity = 59/102 (57.84%), Postives = 77/102 (75.49%), Query Frame = 3
Query:   69 EKNVPSQQNMDIE---EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPP 365
            E+ V  ++  ++E   EE+RL+YLEFVQ A   VL+     Y YAK  +GPL+PGV+ VEGTVK VVGPVYD++HG+P++LLKF+DRKV ESV +LD RVPP
Sbjct:   15 EEEVTVEKTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPP 116          
BLAST of CF509552 vs. ExPASy Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.270e-18
Identity = 40/86 (46.51%), Postives = 61/86 (70.93%), Query Frame = 3
Query:  105 EEEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVP 362
            ++E +LK+LEF+QVA ++   CF  LY  AK  +GPLK GVE++E  V+ V+ P+Y+K+H +P +LL F+DRKVD+    ++  VP
Sbjct:   36 DDEMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFFDVETYVP 121          
BLAST of CF509552 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.659e-18
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 3
Query:  108 EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPP 365
            EE+RLKYL+FV+ A ++ +  F  LY YAK  SGPLKPGV+++E  VK VV PVY     +P+E +KF+D+ VD SVT LD  VPP
Sbjct:    6 EEERLKYLDFVRAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVY----YIPLEAVKFVDKTVDVSVTSLDGVVPP 87          
BLAST of CF509552 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.305e-18
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = 3
Query:  108 EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPP 365
            +E  LK+L FV++ATIH+L    NLY YAK  SGPLK  VE VEG V  VV PVY K+  +P  LL F+D KV E   K D   PP
Sbjct:    9 KEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPP 94          
BLAST of CF509552 vs. ExPASy Swiss-Prot
Match: REF_HEVBR (Rubber elongation factor protein OS=Hevea brasiliensis PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.519e-16
Identity = 46/102 (45.10%), Postives = 67/102 (65.69%), Query Frame = 3
Query:   60 MAEEKNVPSQQNMDIEEEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPP 365
            MAE+++  +QQ     + + LKYL FVQ A  + +  F N+Y +AK KSGPL+PGV+ +EG VKNV  P+Y+++  +P   LKF+D  V  SVT +D  +PP
Sbjct:    1 MAEDED--NQQG----QGEGLKYLGFVQDAATYAVTTFSNVYLFAKDKSGPLQPGVDIIEGPVKNVAVPLYNRFSYIPNGALKFVDSTVVASVTIIDRSLPP 96          
BLAST of CF509552 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.214e-14
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 3
Query:  180 LYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVP 362
            LY YAK ++GPLKPGV +VE  VK VV PVYD++H +P+ELLK+ DRKV E    LD  VP
Sbjct:    6 LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKVGE----LDRHVP 62          
The following BLAST results are available for this feature:
BLAST of CF509552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
Y3550_ARATH1.354e-2865.93REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
SRP_VITRI3.336e-2763.53Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
Y5513_ORYSJ1.267e-2657.84REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI1.267e-2657.84REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
Y2778_ARATH1.270e-1846.51REF/SRPP-like protein At2g47780 OS=Arabidopsis tha... [more]
SRPP_HEVBR1.659e-1854.65Small rubber particle protein OS=Hevea brasiliensi... [more]
Y1736_ARATH6.305e-1853.49REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
REF_HEVBR4.519e-1645.10Rubber elongation factor protein OS=Hevea brasilie... [more]
SRP_PHAVU7.214e-1460.66Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-060 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509552 ID=CF509552; Name=CF509552; organism=Citrus sinensis; type=EST; length=365bp
ACAAGTTAAAGGCTTCTTCTACGACGTCGTTTCACAGTCATTCGTCAATC
ATCATCATCATGGCCGAAGAGAAGAACGTGCCGTCCCAACAAAACATGGA
TATTGAGGAGGAGCAGAGGCTGAAATATTTGGAGTTTGTGCAAGTTGCCA
CAATCCATGTGTTGCTGTGCTTCCATAATCTATATGGTTATGCTAAAGCC
AAGTCCGGACCATTGAAACCTGGTGTGGAGTCCGTTGAGGGGACTGTCAA
GAATGTGGTTGGACCTGTTTATGATAAGTATCATGGTCTCCCGATTGAGC
TCCTTAAGTTTATTGATCGCAAGGTGGATGAGTCTGTGACCAAGCTGGAC
TGCCGTGTGCCTCCA
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