CF509553

Overview
NameCF509553
Unique NameCF509553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length338
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509553 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.641e-24
Identity = 54/107 (50.47%), Postives = 76/107 (71.03%), Query Frame = 1
Query:    1 PIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDH-TIFEEEE 318
            P+M+AAM+GS+ VL Y+I TG+ +VNR C  +  TALHCAV+G + S  E++K+LL ASA  NCVD  GNKPVDL+    +   +  ++A+E+LL G H ++ EEEE
Sbjct:   80 PLMVAAMYGSMEVLNYIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVEIIKILLDASASPNCVDANGNKPVDLLAKDSRFVPNQSRKAVEVLLTGIHGSVMEEEE 186          
BLAST of CF509553 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.504e-23
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 1
Query:    1 PIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFE 309
            P+MIAA+FGS  V+ Y+I TG V+VNR+CGSDG TALHCAV+G + +S E+V LLL  SA+ +  D YGNKP D+I   +     +R + +E LLKG+  + E
Sbjct:   61 PLMIAALFGSKEVVDYIISTGLVDVNRSCGSDGATALHCAVSGLSANSLEIVTLLLKGSANPDSCDAYGNKPGDVIFPCLSPVFSARMKVLERLLKGNDDLNE 163          
BLAST of CF509553 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.191e-22
Identity = 52/116 (44.83%), Postives = 77/116 (66.38%), Query Frame = 1
Query:    1 PIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKG-------DHTIFEEEELVN 327
            P+M+AAM+GS+ VL +++ TGK +VNRACG +  T LHCAVAG + +  EV+ +LL ASA VN VD  GN+P+D+     +     R++A+ELLL+G       D  + EE ++V+
Sbjct:   76 PLMVAAMYGSIKVLTFIVSTGKSDVNRACGEERVTPLHCAVAGCSVNMIEVINVLLDASALVNSVDANGNQPLDVFVRVSRFVASPRRKAVELLLRGGGVGGLIDEAVEEEIKIVS 191          
BLAST of CF509553 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.828e-18
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 1
Query:    1 PIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLL 285
            P+M+AA +GS+AVL+ ++    V+VNR CGSDG TALHCA +GG+ S  E VKLLL+A AD +  D  G +P D+I V  K  +   K A++ LL
Sbjct:  112 PLMVAATYGSLAVLRLLLSLPSVDVNRRCGSDGTTALHCAASGGSPSCVEAVKLLLAAGADADATDASGYRPADVISVPPK--MFDAKIALQDLL 204          
BLAST of CF509553 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.823e-18
Identity = 43/104 (41.35%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    1 PIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEE 312
            P+M+A+++GS+ V+K+++   +  +N +CG D  TALHCA +G + +S +VVKLLLS  AD N  D +GN+PVD++ V+  +P    +  +E +LK D  I E+
Sbjct:   87 PLMVASLYGSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDVVKLLLSVGADPNIPDAHGNRPVDVLVVSPHAP--GLRTILEEILKKDEIISED 188          
BLAST of CF509553 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.075e-17
Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    1 PIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL 321
            P+M+AA +GS+ V+K ++     +VNRACG+D  TALHCA +GGA ++ +VVKLLL+A AD+N +D  G +  D+I V  K  L   K  ++ LL  D +   E  L
Sbjct:   94 PLMVAATYGSIDVIKLIVSLTDADVNRACGNDQTTALHCAASGGAVNAIQVVKLLLAAGADLNLLDAEGQRAGDVIVVPPK--LEGVKLMLQELLSADGSSTAERNL 198          
BLAST of CF509553 vs. ExPASy Swiss-Prot
Match: C3H50_ORYSJ (Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.041e-12
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    1 PIMIAAMFGSVAVLKYVIETGK-VNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSP 249
            P+M+AA +GS  V+  ++  G  V+VNR  G+DG TALHCA +GG+ ++  VVKLLL+A AD    D  G  P D+I     SP
Sbjct:   72 PLMVAATYGSAGVVSLLVGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVVKLLLAAGADPATPDSAGRFPADVILAPPASP 155          
BLAST of CF509553 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.711e-11
Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 1
Query:    7 MIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK 288
            M+AA++GS  VL YV+        RA  +DG T LH A AGGA ++    +LLL+A A V+ +   G +  DL+P A      + ++AI LLLK
Sbjct:   77 MVAALYGSTGVLGYVVAAAPAEAARASETDGATPLHMAAAGGAANAVAATRLLLAAGASVDALSASGLRAGDLLPRAT-----AAEKAIRLLLK 165          
The following BLAST results are available for this feature:
BLAST of CF509553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
C3H29_ARATH2.641e-2450.47Zinc finger CCCH domain-containing protein 29 OS=A... [more]
C3H66_ARATH6.504e-2351.46Zinc finger CCCH domain-containing protein 66 OS=A... [more]
C3H47_ARATH7.191e-2244.83Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H24_ORYSJ2.828e-1849.47Zinc finger CCCH domain-containing protein 24 OS=O... [more]
C3H56_ARATH4.823e-1841.35Zinc finger CCCH domain-containing protein 56 OS=A... [more]
C3H30_ARATH1.075e-1743.93Zinc finger CCCH domain-containing protein 30 OS=A... [more]
C3H50_ORYSJ1.041e-1246.43Zinc finger CCCH domain-containing protein 50 OS=O... [more]
C3H33_ORYSJ5.711e-1140.43Zinc finger CCCH domain-containing protein 33 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-061 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509553 ID=CF509553; Name=CF509553; organism=Citrus sinensis; type=EST; length=338bp
CCAATCATGATTGCTGCCATGTTTGGAAGTGTTGCGGTATTGAAATATGT
TATTGAAACAGGCAAAGTTAATGTGAATAGGGCCTGTGGTTCTGATGGTT
TCACTGCCCTTCACTGTGCTGTTGCTGGTGGTGCCAACTCTTCCTTTGAG
GTGGTCAAGCTCTTACTCAGTGCATCTGCTGATGTTAACTGTGTTGATGT
GTATGGGAATAAGCCAGTTGATCTCATTCCAGTTGCTATGAAATCACCAC
TCCATTCAAGAAAAAGGGCAATAGAGTTATTGTTGAAAGGCGATCATACT
ATTTTTGAAGAAGAAGAATTGGTGAATATTTCCTGTGC
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