CF509553
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF509553 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 2.641e-24 Identity = 54/107 (50.47%), Postives = 76/107 (71.03%), Query Frame = 1 Query: 1 PIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDH-TIFEEEE 318 P+M+AAM+GS+ VL Y+I TG+ +VNR C + TALHCAV+G + S E++K+LL ASA NCVD GNKPVDL+ + + ++A+E+LL G H ++ EEEE Sbjct: 80 PLMVAAMYGSMEVLNYIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVEIIKILLDASASPNCVDANGNKPVDLLAKDSRFVPNQSRKAVEVLLTGIHGSVMEEEE 186
BLAST of CF509553 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 6.504e-23 Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 1 Query: 1 PIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFE 309 P+MIAA+FGS V+ Y+I TG V+VNR+CGSDG TALHCAV+G + +S E+V LLL SA+ + D YGNKP D+I + +R + +E LLKG+ + E Sbjct: 61 PLMIAALFGSKEVVDYIISTGLVDVNRSCGSDGATALHCAVSGLSANSLEIVTLLLKGSANPDSCDAYGNKPGDVIFPCLSPVFSARMKVLERLLKGNDDLNE 163
BLAST of CF509553 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 7.191e-22 Identity = 52/116 (44.83%), Postives = 77/116 (66.38%), Query Frame = 1 Query: 1 PIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKG-------DHTIFEEEELVN 327 P+M+AAM+GS+ VL +++ TGK +VNRACG + T LHCAVAG + + EV+ +LL ASA VN VD GN+P+D+ + R++A+ELLL+G D + EE ++V+ Sbjct: 76 PLMVAAMYGSIKVLTFIVSTGKSDVNRACGEERVTPLHCAVAGCSVNMIEVINVLLDASALVNSVDANGNQPLDVFVRVSRFVASPRRKAVELLLRGGGVGGLIDEAVEEEIKIVS 191
BLAST of CF509553 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.828e-18 Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 1 Query: 1 PIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLL 285 P+M+AA +GS+AVL+ ++ V+VNR CGSDG TALHCA +GG+ S E VKLLL+A AD + D G +P D+I V K + K A++ LL Sbjct: 112 PLMVAATYGSLAVLRLLLSLPSVDVNRRCGSDGTTALHCAASGGSPSCVEAVKLLLAAGADADATDASGYRPADVISVPPK--MFDAKIALQDLL 204
BLAST of CF509553 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 4.823e-18 Identity = 43/104 (41.35%), Postives = 70/104 (67.31%), Query Frame = 1 Query: 1 PIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEE 312 P+M+A+++GS+ V+K+++ + +N +CG D TALHCA +G + +S +VVKLLLS AD N D +GN+PVD++ V+ +P + +E +LK D I E+ Sbjct: 87 PLMVASLYGSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDVVKLLLSVGADPNIPDAHGNRPVDVLVVSPHAP--GLRTILEEILKKDEIISED 188
BLAST of CF509553 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 1.075e-17 Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 1 Query: 1 PIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL 321 P+M+AA +GS+ V+K ++ +VNRACG+D TALHCA +GGA ++ +VVKLLL+A AD+N +D G + D+I V K L K ++ LL D + E L Sbjct: 94 PLMVAATYGSIDVIKLIVSLTDADVNRACGNDQTTALHCAASGGAVNAIQVVKLLLAAGADLNLLDAEGQRAGDVIVVPPK--LEGVKLMLQELLSADGSSTAERNL 198
BLAST of CF509553 vs. ExPASy Swiss-Prot
Match: C3H50_ORYSJ (Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.041e-12 Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 1 Query: 1 PIMIAAMFGSVAVLKYVIETGK-VNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSP 249 P+M+AA +GS V+ ++ G V+VNR G+DG TALHCA +GG+ ++ VVKLLL+A AD D G P D+I SP Sbjct: 72 PLMVAATYGSAGVVSLLVGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVVKLLLAAGADPATPDSAGRFPADVILAPPASP 155
BLAST of CF509553 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 5.711e-11 Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 1 Query: 7 MIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK 288 M+AA++GS VL YV+ RA +DG T LH A AGGA ++ +LLL+A A V+ + G + DL+P A + ++AI LLLK Sbjct: 77 MVAALYGSTGVLGYVVAAAPAEAARASETDGATPLHMAAAGGAANAVAATRLLLAAGASVDALSASGLRAGDLLPRAT-----AAEKAIRLLLK 165 The following BLAST results are available for this feature:
BLAST of CF509553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF509553 ID=CF509553; Name=CF509553; organism=Citrus sinensis; type=EST; length=338bpback to top |