CF509558

Overview
NameCF509558
Unique NameCF509558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:46..602. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509558 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 7.390e-45
Identity = 85/149 (57.05%), Postives = 104/149 (69.80%), Query Frame = 2
Query:  116 CAVNCDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTG--GWTDAPGGEYAWGYCYIRQVSPASSDYWYPYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGV 556
            C   C +G G D G L  +I+RE F+ +L +RND  CPARGFYTYDAFI AA++FP F  +G++  RKRE+AAF AQT HETTG  GW  AP G Y WGYCY R+++PA    W P  PC    QY+GRGP+QLTWN NY +CG A+GV
Sbjct:   58 CQSQC-SGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELNPADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGV 204          
BLAST of CF509558 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 9.651e-45
Identity = 85/151 (56.29%), Postives = 105/151 (69.54%), Query Frame = 2
Query:  116 CAVNCDTGHGTDG--GELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDYWYPYC--PCPLPGQYYGRGPIQLTWNCNYLRCGEALGV 556
            C   C  G    G  G+L  IIS   F+D+L +RNDA CPARGFYTY+AFI AA++FPGFG +G+   RK+E+AAFF QT HETTGGW  AP G Y+WGYC+ ++ +PA SDY  P    PC    +YYGRGP+QL+WN NY  CG A+GV
Sbjct:   69 CQSQCTPGGTPPGPTGDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPA-SDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGV 218          
BLAST of CF509558 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.646e-44
Identity = 78/133 (58.65%), Postives = 98/133 (73.68%), Query Frame = 2
Query:  158 ELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDYWYPYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGV 556
            +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AA+A+P FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYC++R+ +P++     P  PC    QYYGRGPIQ++WN NY +CG A+GV
Sbjct:   75 DLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGV 207          
BLAST of CF509558 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.646e-44
Identity = 81/150 (54.00%), Postives = 103/150 (68.67%), Query Frame = 2
Query:  116 CAVNCDT---GHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDYWYPYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGV 556
            C  +C +   G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AA+A+P FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYC++R+ +P++     P  PC    QYYGRGPIQ++WN NY +CG A+GV
Sbjct:   57 CGKDCQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGV 206          
BLAST of CF509558 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 3.668e-44
Identity = 83/148 (56.08%), Postives = 102/148 (68.92%), Query Frame = 2
Query:  116 CAVNCDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDYWYPYC--PCPLPGQYYGRGPIQLTWNCNYLRCGEALG 553
            C   C        G+L  IISR  F+D+L +RND  CPARGFYTYDAFI AA++FPGFG +G+   RK+EIAAFF QT HETTGGW  AP G Y+WGYC+ ++ +P SS+Y  P    PC     YYGRGP+QL+WN NY +CG A+G
Sbjct:   56 CQSQCGGTPPGPTGDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNP-SSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAIG 202          
BLAST of CF509558 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 6.256e-44
Identity = 83/151 (54.97%), Postives = 106/151 (70.20%), Query Frame = 2
Query:  107 AALCAVNCDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIR-QVSPASSDYWYPYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGV 556
            A  C   C +   +  G++G++I+R MF D+L +RN+  CP +GFYTYDAFI AA+AFPGFG +G+ T RKREIAAF AQT HETTGGW  AP G YAWGYCY+R Q SP +        PC    +YYGRGPIQ+++N NY + G+A+GV
Sbjct:   48 ADYCGSGCQS-QCSSTGDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAIGV 197          
BLAST of CF509558 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 6.917e-43
Identity = 87/168 (51.79%), Postives = 103/168 (61.31%), Query Frame = 2
Query:  116 CAVNCDTGHGTDGGE-----------------LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDYWYPYC------PCPLPGQYYGRGPIQLTWNCNYLRCGEAL 550
            C   CD G G DGG+                 L  II +  F+ LL +RNDARCPA GFYTY+AFI AA+ FP FGN+G++ MRKREIAAF  QT HETTGGW DAP G YAWGYCY+++++        PYC       C    QY GRGPIQL+WN NY  CG+ L
Sbjct:   57 CQSQCDGGGGGDGGDDGCDGGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN------CQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLCGDDL 218          
BLAST of CF509558 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 5.855e-42
Identity = 80/137 (58.39%), Postives = 99/137 (72.26%), Query Frame = 2
Query:  152 GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDYWYP--YCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGV 556
            GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FPGFG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R+   +  DY  P    PC    +Y+GRGPIQ++ N NY  CG A+GV
Sbjct:   72 GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLRE-QGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGV 207          
BLAST of CF509558 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 5.855e-42
Identity = 80/137 (58.39%), Postives = 99/137 (72.26%), Query Frame = 2
Query:  152 GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDYWYP--YCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGV 556
            GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FPGFG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R+   +  DY  P    PC    +Y+GRGPIQ++ N NY  CG A+GV
Sbjct:   77 GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLRE-QGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGV 212          
BLAST of CF509558 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.988e-42
Identity = 78/132 (59.09%), Postives = 98/132 (74.24%), Query Frame = 2
Query:  167 KIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDYW--YPYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGV 556
            KIISR MF+ +L +RN+  CPA+GFYTYDAF+ AA++FP FG +G+  +RKRE+AAF  QT HETTGGW  AP G YAWGYC++++ +P SS+Y    P  PC     YYGRGP+QL+WN NY  CGEAL V
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNP-SSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALRV 134          
The following BLAST results are available for this feature:
BLAST of CF509558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI1_THECC7.390e-4557.05Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIB_ARATH9.651e-4556.29Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIT_PHAVU1.646e-4458.65Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU1.646e-4454.00Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_BRANA3.668e-4456.08Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIB_VITVI6.256e-4454.97Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI6_POPTR6.917e-4351.79Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI2_TOBAC5.855e-4258.39Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC5.855e-4258.39Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIT_CARPA9.988e-4259.09Endochitinase OS=Carica papaya PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-066 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509558 ID=CF509558; Name=CF509558; organism=Citrus sinensis; type=EST; length=558bp
ATTGATATCATAACTCTTGCTTTCAAAATGAGGCTCATTGGGTCCTTACT
AATTTTCTCTCTAGTTTTATCTTTTGTACTAGGAGGTTCAGCACAGAATT
GTGGAAGCGGCGTTGTGTGCGGTGAACTGTGATACTGGCCACGGGACGGA
TGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGC
TTCCGTATAGAAATGATGCCCGATGCCCTGCCAGAGGCTTCTACACTTAT
GATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGG
AAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTG
GCCATGAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATATGCT
TGGGGATATTGCTATATTAGGCAAGTTAGCCCTGCGTCGTCCGACTACTG
GTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGAGGGC
CAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTG
GGGGTGGA
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