CF509559

Overview
NameCF509559
Unique NameCF509559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length415
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig887 contig Csv1_Contig887:1..415. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509559 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.561e-19
Identity = 44/54 (81.48%), Postives = 51/54 (94.44%), Query Frame = 1
Query:  250 AFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRW 411
            AF N+NS +GLKKLDE+LLTRSYITGYQASKDDITV++ALSK P+SE+VNVSRW
Sbjct:    3 AFPNLNSGSGLKKLDEHLLTRSYITGYQASKDDITVFTALSKPPTSEFVNVSRW 56          
BLAST of CF509559 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 2.168e-18
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 1
Query:  241 MAVAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRW 411
            MAV+F NV+S  GLKKLDEYLLTRSYI+GYQAS DD+ VYSA S APSS Y NV+RW
Sbjct:    1 MAVSFTNVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARW 57          
BLAST of CF509559 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.831e-18
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 1
Query:  250 AFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRW 411
            AF N+NS  GLKKLDE+LLTRSYITGYQASKDDITV++AL+K P+S+YVN SRW
Sbjct:    3 AFPNLNSDAGLKKLDEHLLTRSYITGYQASKDDITVFAALAKPPTSQYVNASRW 56          
BLAST of CF509559 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.397e-17
Identity = 39/57 (68.42%), Postives = 49/57 (85.96%), Query Frame = 1
Query:  241 MAVAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRW 411
            MA+   NVNS  GL+KLDEYLLTRSYI+GYQASKDD+TV+++L  AP++ YVNV+RW
Sbjct:    1 MAITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRW 57          
BLAST of CF509559 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 5.339e-17
Identity = 40/57 (70.18%), Postives = 51/57 (89.47%), Query Frame = 1
Query:  241 MAVAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRW 411
            MAV F +++S  GL+KLDEYLL+RSYI+GYQASKDD+ V++AL+K PSS+YVNVSRW
Sbjct:    1 MAVTFYDLSSEAGLEKLDEYLLSRSYISGYQASKDDLAVHAALAKPPSSKYVNVSRW 57          
BLAST of CF509559 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 2.930e-15
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 1
Query:  241 MAVAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRW 411
            MAV F +++S  GL  LD YLL+RSYITGYQASKDD+TV+SA+ KA  + YVNVSRW
Sbjct:    1 MAVTFSDLSSPAGLDSLDAYLLSRSYITGYQASKDDLTVFSAVPKASLASYVNVSRW 57          
The following BLAST results are available for this feature:
BLAST of CF509559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
EF1D2_ARATH2.561e-1981.48Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1D1_ORYSJ2.168e-1875.44Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D1_ARATH2.831e-1877.78Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1D2_ORYSJ2.397e-1768.42Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1D_PIMBR5.339e-1770.18Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D_BETVU2.930e-1566.67Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-067 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509559 ID=CF509559; Name=CF509559; organism=Citrus sinensis; type=EST; length=415bp
CACCTTTGGATATTCTCGCATGGGTGGTATGGGACCCCTGAAGGTTGGAC
CGAAATAGTGTTTTTTTTTGTGGCAGCGGGTCGAGTTTGATTTAATCTTC
AAGGGCCGCGAAACACCAGATCGTTTACTCTATTATAAAACCCTAGCCTT
CACAAAACCAACGCACAAGCCCTAGTAGAGACCTCGCCACTCTCCCTCCG
AGCTAATCTCCCCATTGCTCTTTCTCTCTCCGTTACAGCTATGGCCGTCG
CATTCGATAATGTCAACTCAGCCACTGGTCTGAAGAAACTCGATGAATAC
CTTCTTACTCGCAGTTATATCACCGGGTACCAAGCTTCAAAGGATGATAT
AACTGTGTATTCAGCTCTTTCAAAAGCACCATCATCTGAATATGTCAATG
TGTCTCGGTGGGACA
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