CF509560

Overview
NameCF509560
Unique NameCF509560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length407
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11086 contig Csv1_Contig11086:88..494. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF509560 vs. ExPASy Swiss-Prot
Match: RENT1_ARATH (Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 1.505e-51
Identity = 94/131 (71.76%), Postives = 109/131 (83.21%), Query Frame = 2 
Query:    2 FRDGFSVGSLSQDFLGDDFKSQGSHVPYNVAEFSTQASQSGYAVDYVTQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMAHGSQGLFTQAGYNEPTQDDASQSHFGVGNPNALQTQGMMNSLYSQPF 394
            FRDGFS+G +SQDFL DD KSQGSH PYN+A+F+TQAS  G+AVDY TQGA G FPGNF+NQNSQ GYSRF   NDFMSQ+YMAHG QGLFTQAG+ + +QDD  Q+ +GV NPN LQ+QG+ NSLYSQPF
Sbjct: 1094 FRDGFSMGGISQDFLADDIKSQGSHDPYNMADFATQASPGGFAVDYATQGAHGAFPGNFMNQNSQGGYSRFSGINDFMSQEYMAHGGQGLFTQAGFIDSSQDDGQQNPYGVNNPN-LQSQGLPNSLYSQPF 1223
The following BLAST results are available for this feature:
BLAST of CF509560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RENT1_ARATH1.505e-5171.76Regulator of nonsense transcripts 1 homolog OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-068 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509560 ID=CF509560; Name=CF509560; organism=Citrus sinensis; type=EST; length=407bp
ATTTCGTGATGGATTTTCTGTGGGAAGCTTATCTCAGGACTTCTTGGGAG
ATGACTTCAAAAGTCAGGGATCGCATGTTCCTTATAATGTTGCTGAATTC
TCTACACAGGCTTCTCAAAGTGGATATGCTGTCGATTATGTTACACAAGG
AGCTCAAGGTGGCTTTCCTGGGAACTTCTTAAACCAGAATTCTCAAGCAG
GATATTCTCGTTTTGGTAGTGGGAATGATTTCATGTCTCAGGACTACATG
GCTCATGGATCACAAGGTCTGTTTACTCAGGCTGGCTATAATGAGCCCAC
ACAAGATGATGCATCTCAGAGCCACTTTGGTGTGGGCAATCCCAATGCAC
TTCAGACTCAGGGCATGATGAATTCTCTCTACTCCCAGCCTTTTTGCACA
CTATAAC
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