CF509562

Overview
NameCF509562
Unique NameCF509562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length385
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509562 vs. ExPASy Swiss-Prot
Match: TIM17_ARATH (Mitochondrial import inner membrane translocase subunit Tim17 OS=Arabidopsis thaliana GN=TIM17 PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 2.728e-53
Identity = 101/128 (78.91%), Postives = 106/128 (82.81%), Query Frame = 2
Query:    2 PCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKGL 385
            PCPDRILDD               HF+KGTYNSP G+R  GGTQ+V MNAPR GGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQG G+ASRSA+FGGVLLALIEGAGIMLNK L
Sbjct:   10 PCPDRILDDIGGAFGMGAVGGSAFHFIKGTYNSPKGSRFVGGTQSVSMNAPRTGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFGGVLLALIEGAGIMLNKVL 137          
BLAST of CF509562 vs. ExPASy Swiss-Prot
Match: TI17A_DROME (Probable mitochondrial import inner membrane translocase subunit Tim17 1 OS=Drosophila melanogaster GN=Tim17b1 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 5.536e-30
Identity = 67/127 (52.76%), Postives = 82/127 (64.57%), Query Frame = 2
Query:    2 PCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGA--RLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLN 376
            PCP RI++D                 +KG  N+PSG   RLSGG  AVR  +  VGG+FAVWG  FS  DC++VY R+KEDPWN+II+GA TGG L+ R GL S   SAL GG LLALIEG GI+++
Sbjct:    8 PCPFRIVEDCGGAFAMGALGGGAFQAIKGFRNAPSGLGYRLSGGLAAVRARSGLVGGNFAVWGATFSAIDCSLVYFRKKEDPWNAIISGATTGGILAARTGLTSMLSSALVGGALLALIEGVGIVVS 134          
BLAST of CF509562 vs. ExPASy Swiss-Prot
Match: TI17B_HUMAN (Mitochondrial import inner membrane translocase subunit Tim17-B OS=Homo sapiens GN=TIMM17B PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.233e-29
Identity = 67/128 (52.34%), Postives = 81/128 (63.28%), Query Frame = 2
Query:    2 PCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGAR--LSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNK 379
            PCP RI+DD                 +KG  N+P G R  L G   AVR+ AP++GGSFAVWGGLFST DC +V LR KEDPWNSI +GA TG  L+ R G  +   SA+ GG+LLALIEG GI+L +
Sbjct:    8 PCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAPQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVGILLTR 135          
BLAST of CF509562 vs. ExPASy Swiss-Prot
Match: TI17A_MOUSE (Mitochondrial import inner membrane translocase subunit Tim17-A OS=Mus musculus GN=Timm17a PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.611e-29
Identity = 67/128 (52.34%), Postives = 80/128 (62.50%), Query Frame = 2
Query:    2 PCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGA--RLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNK 379
            PCP RI+DD                  KG  NSP G   RL G   A++  AP++GGSFAVWGGLFST DC+MV +R KEDPWNSI +GA TG  L+ R G  +   SA  GG+LLALIEGAGI+L +
Sbjct:    8 PCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGINHRLRGSLTAIKTRAPQLGGSFAVWGGLFSTIDCSMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTR 135          
BLAST of CF509562 vs. ExPASy Swiss-Prot
Match: TI17A_RAT (Mitochondrial import inner membrane translocase subunit Tim17-A OS=Rattus norvegicus GN=Timm17a PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.747e-29
Identity = 67/128 (52.34%), Postives = 79/128 (61.72%), Query Frame = 2
Query:    2 PCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGA--RLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNK 379
            PCP RI+DD                  KG  NSP G   RL G   A++  AP++GGSFAVWGGLFST DC MV +R KEDPWNSI +GA TG  L+ R G  +   SA  GG+LLALIEGAGI+L +
Sbjct:    8 PCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSTIDCGMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTR 135          
BLAST of CF509562 vs. ExPASy Swiss-Prot
Match: TI17B_MOUSE (Mitochondrial import inner membrane translocase subunit Tim17-B OS=Mus musculus GN=Timm17b PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.686e-29
Identity = 66/128 (51.56%), Postives = 80/128 (62.50%), Query Frame = 2
Query:    2 PCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGAR--LSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNK 379
            PCP RI+DD                 +KG  N+P G R    G   AVR+ AP++GGSFAVWGGLFST DC +V LR KEDPWNSI +GA TG  L+ R G  +   SA+ GG+LLALIEG GI+L +
Sbjct:    8 PCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRFRGSVNAVRIRAPQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSISSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVGILLTR 135          
BLAST of CF509562 vs. ExPASy Swiss-Prot
Match: TI17A_HUMAN (Mitochondrial import inner membrane translocase subunit Tim17-A OS=Homo sapiens GN=TIMM17A PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.686e-29
Identity = 66/128 (51.56%), Postives = 80/128 (62.50%), Query Frame = 2
Query:    2 PCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGA--RLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNK 379
            PCP RI+DD                 +KG  NSP G   RL G   A++  AP++GGSFAVWGGLFS  DC+MV +R KEDPWNSI +GA TG  L+ R G  +   SA  GG+LLALIEGAGI+L +
Sbjct:    8 PCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTR 135          
BLAST of CF509562 vs. ExPASy Swiss-Prot
Match: TI17B_BOVIN (Mitochondrial import inner membrane translocase subunit Tim17-B OS=Bos taurus GN=TIMM17B PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.364e-28
Identity = 66/128 (51.56%), Postives = 80/128 (62.50%), Query Frame = 2
Query:    2 PCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGAR--LSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNK 379
            PCP RI+DD                 +KG  N+P G R  L G   AVR+ AP++GGSFAVWGGLFST DC +V LR KEDPWNSI +GA TG  L+ R    +   SA+ GG+LLALIEG GI+L +
Sbjct:    8 PCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGMRHRLRGSVNAVRIRAPQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSVPLAMVGSAMMGGILLALIEGVGILLTR 135          
BLAST of CF509562 vs. ExPASy Swiss-Prot
Match: TI17C_DROME (Probable mitochondrial import inner membrane translocase subunit Tim17 3 OS=Drosophila melanogaster GN=Tim17a1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.967e-28
Identity = 61/123 (49.59%), Postives = 79/123 (64.23%), Query Frame = 2
Query:    2 PCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGA--RLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAG 364
            PCP RI++D                FLKG  N+P+G   RL GG   V+M  P + GSFAVWG  FST DC +V+ RQ+ED WNSI++GAATGG L+ R G+ + + SAL G ++LA+IEGAG
Sbjct:    7 PCPIRIVEDCGCAFMMGTIGGSLFEFLKGFRNAPTGLQRRLYGGIDLVKMRTPSIAGSFAVWGATFSTVDCALVHYRQREDAWNSILSGAATGGILAARNGIRAMANSALVGCLVLAMIEGAG 129          
BLAST of CF509562 vs. ExPASy Swiss-Prot
Match: TI17D_DROME (Probable mitochondrial import inner membrane translocase subunit Tim17 4 OS=Drosophila melanogaster GN=Tim17a2 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.508e-27
Identity = 58/123 (47.15%), Postives = 79/123 (64.23%), Query Frame = 2
Query:    2 PCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGAR--LSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAG 364
            PCP RI++D                +LKG  N+PSG R  L GG ++VR+  P + GSFA+WG  FST DC MV  RQ+ED WN+I++GAATGG L+ R G+ + + SA  G ++LA++EGAG
Sbjct:    7 PCPIRIVEDCGCAFMMGTMGGSLFQYLKGFRNAPSGLRRGLHGGIESVRLRTPAIAGSFAIWGATFSTVDCVMVSYRQREDSWNAIVSGAATGGILAARNGIRAMANSAFVGCLVLAMLEGAG 129          
The following BLAST results are available for this feature:
BLAST of CF509562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
TIM17_ARATH2.728e-5378.91Mitochondrial import inner membrane translocase su... [more]
TI17A_DROME5.536e-3052.76Probable mitochondrial import inner membrane trans... [more]
TI17B_HUMAN1.233e-2952.34Mitochondrial import inner membrane translocase su... [more]
TI17A_MOUSE1.611e-2952.34Mitochondrial import inner membrane translocase su... [more]
TI17A_RAT2.747e-2952.34Mitochondrial import inner membrane translocase su... [more]
TI17B_MOUSE4.686e-2951.56Mitochondrial import inner membrane translocase su... [more]
TI17A_HUMAN4.686e-2951.56Mitochondrial import inner membrane translocase su... [more]
TI17B_BOVIN1.364e-2851.56Mitochondrial import inner membrane translocase su... [more]
TI17C_DROME3.967e-2849.59Probable mitochondrial import inner membrane trans... [more]
TI17D_DROME1.508e-2747.15Probable mitochondrial import inner membrane trans... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-070 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509562 ID=CF509562; Name=CF509562; organism=Citrus sinensis; type=EST; length=385bp
GCCTTGCCCTGACCGTATTCTTGATGATGTTGGTGGTGCATTCGGAATGG
GTGCGGTTGGAGGTGCCGCATTCCACTTCTTGAAAGGCACATATAATTCC
CCGTCAGGTGCACGTTTAAGTGGAGGAACTCAAGCAGTACGTATGAATGC
CCCTCGAGTTGGCGGCAGTTTTGCTGTGTGGGGCGGCCTCTTCTCTACTT
TTGATTGCACAATGGTGTATCTCCGACAAAAGGAAGACCCATGGAACTCA
ATTATAGCTGGTGCTGCCACTGGGGGGTTTCTTTCAATGCGGCAAGGGTT
GGGTTCTGCTTCCAGGTCGGCTTTGTTTGGTGGGGTCTTGCTTGCTTTGA
TTGAAGGAGCTGGGATCATGTTAAATAAGGGTCTC
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